KEGG   Populus trichocarpa (black cottonwood): 7497327
Entry
7497327           CDS       T01077                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03420  Nucleotide excision repair
pop04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7497327
  09124 Replication and repair
   03420 Nucleotide excision repair
    7497327
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7497327
   03400 DNA repair and recombination proteins [BR:pop03400]
    7497327
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     7497327
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      7497327
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 7497327
NCBI-ProteinID: XP_024439985
Position
14:953134..957578
AA seq 452 aa
MWREIRDREAGKTRPNSFKNRVSSSRISNLQLSNYKDVVSPHRGSINSLQVDLTEGRYLL
SGASDASASVFDIQHATDFEGGGEGALIAKHKSLITIDKQHQNGHKFAISSAIWYPIDTG
LFVTGSYDHYIKVWDTNSTQMVINFKLPGKVYRTAMSPLATSHMLIAAGTEDVQVRLCDI
ASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLG
RRPPVLARSAVSKVSTSKALSKGQNLLGKPRMPQKKSGGGNGIKHSPLGQVPAKGYLKQR
LHPGMLSSQDRATAHYGAVTGLKITEDGMYLLSAGSDSRIRLWDVESGRNTLVNFETARL
QTSKPIQLATAQDSNLVFVPCMTSVKAFDVWSGKTYVTFRGHYEHVNCCWFSSQDQELYT
GGNDRQILVWSPARLIPNEDASPAEDQDNWSD
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgtggagggaaatcagagacagagaagcgggcaaaacccgccccaattcattcaagaac
cgggtcagttcctccaggatctctaatcttcaactctccaattacaaagacgttgtctcc
cctcacagaggttccatcaactctcttcaggttgatttgacagaggggagatacttatta
tccggggcatcagatgcatcagcttctgtttttgatattcaacatgccacggattttgaa
gggggaggagaaggagctctgattgccaagcacaagtctttaattactattgacaagcaa
catcaaaatggtcataaatttgccatatcttctgctatttggtatccaattgacacgggc
ctatttgttactggttcttatgatcattatattaaagtttgggatacaaattccacccag
atggttatcaatttcaaattgcctggaaaggtgtatagaactgcaatgtctccgttggca
acttctcatatgttaatagccgctggaactgaagatgttcaagttcgactctgtgatatt
gcttcgggggcatttgcgcatacgctatctggtcatcgtgatggtgttatgacagtggaa
tggtctacttcaagtgaatgggttctggttactgggggatgtgacggtgccatacggttt
tgggatatcaggcgtgctggatgttttcttgttttggatcagtcccagtctcagcttggc
agacggccacctgtgcttgcacgatctgccgtgagtaaggtttcaacttcaaaggcacta
tctaaaggccaaaatctccttggaaaaccaaggatgcctcaaaagaaatctggtggtggg
aatggaataaagcattcacctcttggtcaagttccagccaagggatatctaaagcaacga
ttacatccagggatgttgtcaagtcaggatcgtgccactgcacattatggtgctgttact
ggtttaaaaataactgaagatggcatgtatcttctaagtgcaggatcagattcaagaata
aggttgtgggatgtcgaatcaggccgcaatacccttgtgaactttgaaactgcacgctta
caaactagcaagccaattcagttggccacagctcaggattcaaatctcgtttttgttcca
tgcatgacctctgtgaaagcatttgatgtttggtcgggtaagacgtatgtgacatttcgt
ggccattacgagcatgtgaactgttgctggtttagttctcaagatcaggaactgtacaca
ggtggcaatgatagacaaattctagtttggtccccggccagattgattcccaacgaggat
gcaagtccagctgaggatcaagataactggagcgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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