KEGG   Populus trichocarpa (black cottonwood): 7497342
Entry
7497342           CDS       T01077                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7497342
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7497342
Enzymes [BR:pop01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     7497342
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     7497342
SSDB
Motif
Pfam: CAF1 Ribosomal_L28e
Other DBs
NCBI-GeneID: 7497342
NCBI-ProteinID: XP_024441104
Position
14:complement(1142027..1146097)
AA seq 274 aa
MVAVSPLLQRRLLSTSVTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQ
NTGSFSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYPYNFHLFP
RAELKMEMPSYSFYCQTSSLISMARQGFDFNSCIKDGISYLSREQESTAKIQMGNPILAK
NVTESTSTLSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEE
YDSRPCMNIDVCSERQAQLVVEQRVEQCRQFVLF
NT seq 825 nt   +upstreamnt  +downstreamnt
atggttgccgtctccccactgctgcaaaggcgcctgttaagcaccagcgtgactaaaacc
caccataaacctcaccagcaatggagcataaagcaagtcacaaaatcaaactttgctgac
actcttaaggatataaaatcccatgtctccaattctgattttgtggccgtgtccttgcaa
aacaccggctccttctccgccccttggcaacgcgtctccccttttgacaccgccgacacg
gcttacttaaaagccaagtatgccgctgaaaggttccaggttcttcatttcgctgtttgc
cccatcactgtcagggcttctaaagtcactgcctacccatataattttcacttgttccca
agagctgaactaaagatggaaatgccttcttacagtttttattgtcaaacctcgtctttg
atatctatggctcgccaaggttttgactttaattcttgcataaaggatggtatctcatac
ttgtccagagaacaagaatctactgcaaaaattcagatggggaatccaatacttgcaaag
aatgtgacagaatccacttctaccctttctgttgctgattctgtattcgttgaaaggatt
aaatcacacattaaaaattggaagaaagcatgtaaagaaactagcacaaggaaagaaggc
aaccaaattcaagatgctctggtcagatccctaagaaaactcgttctaggaaatgaagag
tatgattcaagaccgtgcatgaatatagatgtttgcagcgaacgccaagcgcagcttgtg
gttgagcaaagggtggagcaatgcaggcagttcgtgttgttttaa

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