KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_1088868

Entry

POPTR_1088868 CDS T01077

Definition

hypothetical protein

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop03030	DNA replication
pop03410	Base excision repair
pop03420	Nucleotide excision repair
pop03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:pop03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:pop03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pop03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:pop03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 684 aa
MSNARAAASAKKKTQPQPQLKPSSPKKRKTLDHPQNPDKTLSSIVLLKKKAGDFKPEMVA
NWEKGERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVA
PAHEGVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPL
TITKVFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTL
LAALGQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKT
CSFTPGVPVGPMLAKPTKGVSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNS
ERNTGKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDI
KVNVCIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFL
DTAVDASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKR
TGVYGAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIK
PDVWFEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSE
QVAEMYNAQKHNHQNNQDDNDDDD

NT seq 2055 nt +upstreamnt +downstreamnt
atgtccaacgcacgtgccgccgcctccgctaagaaaaaaacccaaccccaaccccaatta
aaacccagctcccccaaaaaacgcaaaaccctagaccatcctcaaaaccctgataaaacc
ctcagttccattgtgttgttaaagaagaaagctggggattttaagccggagatggtggct
aattgggagaaaggagagagggttccgtttatatttgtttctttggcttttgatttgata
gcgaacgagacagggaggattgtgattactgatattgtttgtaatatgttgaggactgta
atggatactactccggaggatttggtggctgtggtttatttgttagctaataaggttgcc
cctgcgcatgagggagtggaacttgggattggggaagctttgattattaaggcgctggcg
gaggcgtgtgggaggaaagagaaggaggttaagaagcagtataaggacttgggagatttg
ggccttgttgcaaaagcaagtcggtcatcccaatctatgatgcgcaagcctgatccatta
acaattactaaagttttcaacacatttcaacagattgctaaggaatccgggaaggatagt
caagacaagaaaaagaaccatatcaaggcacttcttgttgcagccacagactgcgagcct
ctgtatctaattcgtctgcttcagacaaagttgagaattggattggcagaacagactctt
ttggctgccctgggacaagctgctgtatatactgaagagcattctactcctcctccacac
attcagtctcctttagaagaggctgcaaagattgttaaacaagtttactctgtgcttcct
gtctatgataaaatagtccctgctcttcttagtgatggcgtatggaatcttcccaagaca
tgcagcttcacacctggtgttccagttggacctatgctggcaaaaccaaccaaaggggtt
tctgagatagtaactaaatttcaggatatggaattctcctgtgaatacaagtatgatgga
gaacgtgcccagatacattacttggagaatggttcggttgagatatatagtcgaaattct
gagcgaaatactggaaaatttcctgatgttgttgctgtaatttcccgattaaagaggccc
tcagcaagctcatttattctggattgtgaactagttgcgtatgatagagaaaaaaagaaa
attctcccctttcagatcctcagcacccgggcccgaaaaaatgtggtgatgagtgatatc
aaggttaatgtttgcatatatgccttcgacatgttgtatcttaatgaccaaccacttatt
cagaaagaactgaaagttcgtagagagcatctttacagttcattcgaggaagaacctgga
ttttttcagtttgcaactgcaataacatcaaatgatcttgaagagatacaaaaattcctc
gacactgctgttgatgccagttgtgagggtttaatcatcaaaacaatgaataaggatgct
acatatgaaccttcaaggcgatcacataactggctgaaattgaagaaagattatatggaa
agtattggagactcactagatctagtgcctattggtgctttccatggtcgtggaaaacgt
acaggtgtctatggtgcttttctccttgcttgttataatagcaacaacgaagaattccag
agcatatgtaaaataggcactggattttctgaacaagtgcttgaggaacgttctgctagt
ctccgttcacaagtgattcccaaaccaaagtcatactatagatttggagatactattaaa
ccagatgtgtggtttgaacccaaggaggtgtgggaggtgaaagcagcagacttgactatt
agccctgttcatcgtgctgcaattggtgaagttgatcctaacaagggaatttcactaaga
tttccacgtcttgttcgagttcgagaagacaagtctccagagcaagcctcatcatcagag
caggttgctgagatgtataatgcccaaaagcataatcatcaaaacaatcaagatgacaat
gatgatgatgattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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