KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_421205

Entry

POPTR_421205 CDS T01077

Gene name

SHMT2

Definition

precursor of transferase serine hydroxymethyltransferase 2 (EC:2.1.2.1)

Orthology

K00600

glycine hydroxymethyltransferase [EC:2.1.2.1]

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop00260	Glycine, serine and threonine metabolism
pop00460	Cyanoamino acid metabolism
pop00630	Glyoxylate and dicarboxylate metabolism
pop00670	One carbon pool by folate
pop01100	Metabolic pathways
pop01110	Biosynthesis of secondary metabolites
pop01230	Biosynthesis of amino acids

Module

pop_M00532

Photorespiration

Class

Metabolism; Carbohydrate metabolism; Glyoxylate and dicarboxylate metabolism [PATH:pop00630]
Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:pop00260]
Metabolism; Metabolism of other amino acids; Cyanoamino acid metabolism [PATH:pop00460]
Metabolism; Metabolism of cofactors and vitamins; One carbon pool by folate [PATH:pop00670]

SSDB

Motif

Pfam:

SHMT Beta_elim_lyase Aminotran_1_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 518 aa
MAIAMALRRLPSSFDKPLRPALFKATSLYYMSSLPDEAVYEKEKPGVTWPKQLNAPLEVV
DPQIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEFI
DMAESLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHL
SHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLY
DYARIRKVCDKQKAILLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFF
RKGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQATTLEYKAYQEQ
VLSNCSKFAQSLVEKGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLESVHIAANKNTVP
GDVSAMVPGGIRMGTPALTSRGFVEEDFAKVADFFDASVKLAVKMKAETKGTKLKDFLVT
MQSAHFQSEISKLRHEVEEYAKQFPTIGFNKETMKYKN

NT seq 1554 nt +upstreamnt +downstreamnt
atggcaatagccatggcccttcgcaggctcccctcttcctttgacaagccccttcgcccc
gctctcttcaaagccacctccctctattatatgtcttccttgccggatgaagctgtatac
gagaaggagaaacctggtgtcacttggccaaagcagctaaatgcacccttagaggttgtt
gacccacaaattgctgatattattgagctcgagaaagctaggcaatggaaggggcttgag
cttataccctcagagaacttcacctccgtatcagtgatgcaagccgtgggttctgtcatg
accaacaagtacagtgaaggatatccaggtgcaagatactacggtggaaacgagtttatt
gacatggcagaatcattatgtcagaagcgtgctctggaagcatttcgcctggatcctgct
aaatggggagtcaacgtgcaatctttatctggatctccatctaattttcaagtctacact
gcattgttaaaacctcatgaaagaatcatggcacttgatcttcctcacggaggccatctt
tctcatggctatcagacagacaccaaaaaaatatctgcagtgtcaatattttttgagaca
atgccatacagattgaatgagagcactggctatattgactatgatcagctggagaaaagt
gccactcttttcagaccaaaattaatagtagctggtgctagtgcttatgcacgtctatat
gattatgcacgcattcgcaaggtttgcgacaaacaaaaagctatactgttggccgatatg
gcgcacattagtggattggttgcagctggtgtcatcccatcgccttttgagtatgcagat
gtagtgaccaccacaactcacaagtcacttcgtgggccacgtggggccatgattttcttc
aggaaggggctgaaagaggttaacaaacaagggaaagaggtcttttatgactatgaggac
aaaatcaatcaagctgtctttcctgggcttcaaggtggtccacacaaccacacaattgct
ggtttagcagttgctttgaaacaggctacaactctggagtacaaagcgtatcaagagcag
gttcttagtaattgctcaaaatttgctcagagtctagttgagaaaggctatgaacttgtt
tctggtggaactgagaaccatttagttttggtgaacctgaagaacaagggtattgatggc
tccagagttgaaaaggtgctcgaatctgttcacattgctgcaaacaaaaacactgttcct
ggtgatgtgtctgccatggttcctggtggcatcaggatgggaacaccggctcttacttct
agggggttcgtggaagaggattttgctaaggtggcagatttctttgatgcttcggtgaag
ttggcagtgaagatgaaggctgaaaccaaagggacaaagttgaaggatttcttggttaca
atgcagtctgctcactttcaatctgagatttcaaaactccgtcatgaagtggaagaatat
gctaagcaattcccaacaattggatttaacaaagaaaccatgaagtacaagaat

All links

Pathway (8)   
   KEGG PATHWAY (7)   
   KEGG MODULE (1)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (31)   

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