KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_561919

Entry

POPTR_561919 CDS T01077

Definition

hypothetical protein

Organism

pop Populus trichocarpa (black cottonwood)

Class

SSDB

Motif

Pfam:

FancD2 MATH Shugoshin_N CCDC144C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 1151 aa
MEAAATSSTCSSSAPIPSHSDQSSPGTSSSTAMTTTTTSTIDDITVGTTLDGTNGAAAET
VTIDRRGEYSATCKWTVQSFPRVKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIY
LQIMDPREWGVNWREDWEWSEEVRWAYGEIHLEDREFHEVEGSFEEEEDYWSLHQEQEVS
DWEPGLPTHCLSSSHRLSVVNQRMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDS
GFLVQDTVVFSAEVLILKETSIMQDFTDQDTESTNGTSQIDKVGKRSSFTWKVENFLSFK
EIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYRMAVVNQ
KNPAKTVWKESSICTKTWNNSVLQFMKVSDMLETDAGFLVRDTVVFVCEILDCCPWFEFS
DLEVLASEDDQDALTTDPDELIDSEDSEGNSGDEEDIFRNLLSRAGFHLTYGDNPSQPQV
TLREKLLMDAGAIAGFLTGLRVYLDEPAKVKKLLLPTKLSGGNDGKKAAKADESSPSLMN
LLMGVKVLQQAIIDLLLDIMVECCQPLEGSSNDDSSDAHSKPSLDGSGAASPLESDRGSG
ATESAQFPVHERLDSGLDDSKRASAVQSSDINGTDMPGQALPGQPIYPPVTTAGGALENA
SLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQP
DLVSLIPKLVEHAEHPLAAYALLERLKKPDAEPALWIPVFGALSQLECGSDVWERVLIQS
FDLLADSNDEPLAATIDFIFKAASQCQHLPEAVRSVRTRLKNLGADVSPFVLDFLSRTVN
SWGDVAETILRDIDCDDALGDSCSTLPCGLFLFGENASAAERLHVVDEQTFHFRCHFSDI
YILIEMLSIPCLAVEASQTFERAVARGAIMAQSVAMVLERRLAQRLNFNARFVNENFQHT
DAIIEEEASEQLRVQRDDFSVVLGLAETLALSRDLCVKGFVKMLYTILFKWYANETYRGR
MLKRLVDRATSTTDNSCDVDLDLDILAILVCEEQEIVKPVLSMMREVAELANVDRAALWH
QLCASEDEIIRIRDERKAENSNMAREKANLSQKLSDCEATNNRLKVPHIIQLINIWGISY
GCLLMLITLFK

NT seq 3456 nt +upstreamnt +downstreamnt
atggaagcggcagccacatcttctacctgctcatcatctgcccctataccttctcactcc
gaccaatcctctcccggcacctcatcatcgacagcaatgacgacaacaacaacctcgaca
atcgacgatatcaccgtggggacaacgctagacggaacgaacggagcggcagcagaaacc
gtgacaatcgatcggcgaggggagtattccgcaacctgcaaatggacggtacagagtttt
ccacgtgttaaagctagggcattatggagtaaatattttgaagtagggggttacgattgc
cgtttattaatctaccctaaaggtgactcccaagctttgcctgggtacatctcaatctat
cttcaaatcatggaccctcgcgaatggggggttaattggagggaggattgggagtggagc
gaggaagtccgatgggcatatggggaaattcacttggaggatcgagaatttcatgaggtt
gaaggatcttttgaagaagaggaagattactggtctttgcatcaagagcaggaggtttca
gattgggaaccgggattgccgactcattgtttatcctcgagccatcgattgtcagttgtc
aaccagaggatggaagagaagtctgtcacaaaggaatctcaaaatcgctattccaaagct
gcaaaagattggggttggcgtgaattcgtgacactcacaagcctgtttgatcaagactct
gggtttcttgttcaagataccgttgtattctctgcggaggttctcattttgaaagaaaca
tccattatgcaagattttacggatcaggatactgagtcaactaatggcacttcccagatt
gacaaggttgggaaaagaagttcatttacatggaaggtggagaacttcttgtccttcaaa
gaaataatggaaactcgaaaaatatttagcaagttcttccaagctggtggctgtgagctt
cggattggtgtgtatgagtcctttgacaccatatgcatatatttagagagtgatcagtca
gttggtagtgatccagataaaaacttttgggtcagatacaggatggctgttgtgaatcaa
aaaaatccagccaagactgtgtggaaggagtcatctatttgtacaaagacatggaataat
tctgtcctgcaattcatgaaggtgtcagatatgttggaaacagatgcagggttcctcgta
cgtgatactgttgtttttgtatgtgaaattttagattgctgcccatggttcgagttttca
gatttagaggttttggcgtccgaggatgatcaggatgctttaacaactgatcctgatgaa
ctcattgattctgaagatagtgaaggaaatagtggagatgaagaagatatctttagaaac
cttctttccagagctgggtttcacctcacatacggagataatccttcacagcctcaggtt
accttaagagaaaagcttctaatggatgccggtgcaattgctggttttctgactggacta
cgtgtttatcttgatgaaccagctaaagtaaagaagctgcttcttccaaccaagctttct
ggtggcaatgatggaaagaaggctgcgaaggctgatgaatcttctcccagcttgatgaat
ttgttgatgggagttaaagttttgcagcaggcaatcatagatttactattggacataatg
gttgaatgttgccaacctttggaaggaagttcgaatgatgattcctctgatgcgcactca
aagccttctcttgatggcagtggtgctgccagcccattggaatctgacaggggaagtgga
gcaactgaatccgctcaatttcctgtacatgaaaggttggattctggtctagatgattct
aaaagagcatctgctgtacaaagctctgacataaatgggactgatatgcctggacaagct
cttccaggacagcctatttatccaccagtaacaactgcaggaggtgctttggaaaatgct
tctcttcgctctaagaccaagtggccagaacaatctgaggagctcttgggactgattgtt
aactcactgagagccctagatggagctgttccacaaggctgcccagagccaagacgaaga
cctcagtctgcacaaaagattgctcttgtactggataaagctcccaagcatctgcagcca
gacctggtttctttgattcccaaattggttgagcatgcagagcatccattggcggcttat
gcacttcttgaaagacttaaaaagcctgatgcagaacctgcactgtggatacctgttttt
ggtgctcttagtcaactggagtgtggcagtgatgtgtgggagcgtgttttaattcagtct
tttgatcttttggctgattcaaatgatgagcctcttgctgctaccatagattttatattc
aaggctgcatcccagtgtcaacatcttccggaagcagtcagatcagttcgcactaggtta
aaaaacttgggggctgatgtgtctccttttgtcctagattttttgagcagaactgtgaat
agttggggagatgttgctgaaaccatactaagagatattgattgtgatgatgcccttggt
gatagctgctcaacattgccttgtggcctcttcttgtttggagaaaatgcatcggctgct
gaaaggttgcatgtggtggatgagcagacattccattttagatgtcatttttctgacatt
tatatcctgattgagatgttatccataccttgccttgctgttgaggcttctcaaacattt
gagagggctgtagctcgaggagcaattatggctcaatctgtagcaatggtcttggaaaga
cgccttgctcagagattgaattttaatgccagatttgttaatgaaaattttcagcacaca
gatgctataatagaggaagaagccagtgaacagctgcgagtccaacgtgatgatttttct
gttgttcttggtcttgctgagacactggctctttctagagacctttgtgtgaagggattt
gttaagatgctgtacacaatactatttaaatggtatgccaatgagacctatagagggaga
atgctaaagagacttgttgatcgtgccaccagtactactgataatagttgtgatgtagat
ttagatttggatatattggctattttagtttgtgaggagcaagaaattgttaaacctgtt
ctgagcatgatgcgggaggttgctgaacttgcaaatgttgatcgggcagctctctggcat
cagctatgtgctagtgaagatgaaattattcgtatacgtgatgagaggaaagcagaaaat
tccaatatggctcgggagaaggcaaatctatctcaaaaattgagtgactgtgaggccact
aacaataggctaaaggtacctcatataattcagttaataaacatatggggaatttcatat
gggtgtttattaatgttaataacactattcaaatga

All links

Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-POP (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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