KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_567249

Entry

POPTR_567249 CDS T01077

Definition

hypothetical protein

Orthology

K04646

clathrin heavy chain

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop04144

Endocytosis

Class

Cellular Processes; Transport and catabolism; Endocytosis [PATH:pop04144]

SSDB

Motif

Pfam:

Clathrin Clathrin_propel Clathrin_H_link Clathrin-link Totivirus_coat

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 1705 aa
MAAANAPITMKEVLTLPAIGISPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMKAKMKSYQMPEQIVFWKWI
TPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLQSNQIINYKCDPSEKWLVLIGIAPGS
PERQQLVKGNMQLFSVDQQRSQALEAHAASFAQYKVPGNENPSTLISFATKSFNAGQITS
KLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYAITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASTVGGFYAINRRGQVLLATVNEAMIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQ
PGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYAPDYLFLLQTILRTDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLAEHGYLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTDLPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYCEQLGVDACVKLFEQFK
SYEGLYFFLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDPEKTKNFLMEA
KLPDARPLINVCDRFGFVADLTHYLYSSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARY
VVERMDGDLWEKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSEAIE
SFIRADDATQFLEVIRAAEDANVYHDLLKYLLMVRQKTKEPKVDSELIFAYAKIDRLSDI
EEFILMPNVANLQNVGDRLYDEALYEAARIIFQFIANWAKLASTLVKLKQFQSAVDAARK
ANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSNNVSAVNEALNQIYVEEEDYERLRESIDL
HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGD
RELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELAWMNNMIDFAFPYLLQFIREY
TGKVDELVKYKIEAQKEVKAKEQEEKDVIAQQNMYAQLLPLALPAPPMPGMGGPTMGGGF
APPPPMGGMGMPPMPPFGMPPMGSY

NT seq 5118 nt +upstreamnt +downstreamnt
atggccgcggctaacgccccgatcaccatgaaggaagtcttaactttaccggctatcggg
attagtcctcagtttattacgtttacaaatgtaacgatggaatcagacaagtatatatgt
gtacgggaaacagcgccacaaaatagtgttgtaattatcgatatgaacatgccaatgcag
ccattgagacgccctatcactgcagattctgctctcatgaatccaaattctagaatcctt
gctttgaaagcccaacttccgggaactactcaggatcacttacaaatatttaacatcgag
atgaaagcaaaaatgaaatcataccagatgcctgagcagattgtcttttggaagtggata
acccctaagatgctgggcctggttacacagacatcagtttatcattggtctattgaaggt
gattctgaaccagtgaagatgtttgagagaactgctaatttgcaaagcaatcagattata
aactacaaatgtgacccttctgagaaatggttagttttgattggaattgctcctggctca
cctgagcggcaacaattggttaaagggaacatgcaacttttctctgtggatcaacaacgt
agccaagctcttgaagcacatgctgcatcatttgcacaatataaggttccaggaaacgag
aacccttccactctgatttcttttgccacaaaatcttttaatgctgggcagattacatcg
aagttgcatgttattgagcttggtgcccagccagggaagccatcatttacgaagaaacag
gcagatctgttctttcctcctgattttgctgatgactttcctgtggcaatgcagatatcc
cacaaatacagtttgatttatgcaatcacgaagcttgggctgctatttgtttatgatttg
gagacagctactgcagtataccgaaacagaattagtccagatccaatatttttgacagct
gaggcttcaacggtgggagggttttatgccattaataggcgaggccaggtgttgttggct
actgtaaatgaagcaatgattgtgccatttgttagtggccagttgaataatctggagctt
gctgtcaatctagccaaaagaggaaaccttcctggtgctgagaatctggttgtccagcgt
ttccaagaattattcgctcaaacaaagtataaagaagctgctgagcttgctgctgagtca
ccacaaggcattcttcgaactcctgacacagttgccaagtttcagagtgttccagtgcaa
cctgggcaaacccctcccttattgcaatactttgggacccttttaactagaggaaagctt
aatgcatttgagtcattggaattgtcccgccttgtggtcaatcagaacaaaaagaatctt
ttggagaactggttggcagaggacaagttggagtgtactgaggaactgggagaccttgtg
aagacagtggataatgatcttgctctgaaaatatatattaaagctagggcaacccctaaa
gttgttgcagcttttgctgagagaagggagtttgacaaaattttgatatactcgaagcag
gttggctatgctcctgactatttattccttctgcaaacaattctccgtacagatccacag
ggtgctgttaactttgctttgatgatgtcccaaatggaaggtggctgtccagttgactac
aataccattactgatctctttcttcagaggaacttgatccgtgaggcaacagcctttctg
ttggatgttttgaagccaaatttagcagagcatggttacctccaaacaaaggttctggag
ataaatctggtaacatttcctaatgtagctgatgctattctagccaatgggatgtttagc
cactatgatcgtcctcgtattgctcaactctgtgaaaaagctggtctttacatccgagcc
ctgcagcattatacggatttgccagatattaaacgtgtgatcgtgaatacacatgcaata
gagccacaggcacttgttgagttttttggcactctttcacgagaatgggctctggagtgc
atgaaggatctcttactggttaatctaagaggcaaccttcagataattgttcagactgcc
aaggaatattgtgagcagttgggtgttgatgcatgcgtaaaacttttcgaacaattcaaa
tcatatgaagggttgtactttttcttggggtcatatttgagttccagcgaggatcctgat
atacattttaagtacatcgaggcagctgctagaaccggacaaataaaggaggttgagcgt
gttactagggagtcaaatttttatgatcctgaaaagacaaagaactttctgatggaagcc
aagcttccggatgcaaggcctctaataaatgtctgtgaccgttttggttttgttgctgat
ctcacacactacctctattcaagcaacatgcttcgttatatagagggttatgttcaaaag
gtgaacccagggaatgctcctttagttgtcgggcagctgttagatgatgaatgcgccgaa
gactttatcaagggccttattctttctgtccgttctttgcttccagttgagccccttgtg
gaggaatgtgagaagagaaatcgacttcgtttgctcactcagttcttggaacatcttgtg
agtgagggaagccaagatgtacatgttcacaatgctcttggtaaaatcatcattgatagc
aataacaacccagaacacttcctcaccaccaatccttactatgattcccgggttgtgggc
aagtattgtgagaaacgtgatcccacccttgctgttgttgcttaccggagaggacaatgt
gatgaagaactcatcaatgtcacaaataagaactctttgttcaagttgcaagccagatat
gtggttgaaaggatggatggtgatctttgggagaaggttctgaatcctgaaaatgaatac
cgaagacagcttattgatcaagttgtatctactgctttgccggaaagtaagagcccagag
caagtttctgctgctgttaaagctttcatgactgctgatctgccccatgaattgattgag
cttcttgagaagattgtgctccaaaactctgcattcagtggaaatttcaatctccaaaac
ctacttatcttgacagcgattaaggctgatccttctagggttatggattatattaataga
ttagataactttgatggacctgctgttggggaagtggcagttgaagctcagctttacgag
gaagcatttgcaattttcaagaagttcaacttgaatgttcaggctgttaatgttttattg
gataacatccaaagcattgaccgtgccgtggagtttgcattccgtgttgaagaagatgct
gtttggagccaggtggccaaggcccaactcagagagggccttgtgagtgaagcaattgag
tcatttattcgtgcagatgacgctactcaattcctggaagtcattcgtgctgctgaggat
gcaaatgtctatcatgatttgttgaagtaccttctcatggttaggcagaagacaaaagag
ccaaaggtggatagtgagcttatttttgcatatgcaaagattgataggttgagtgacatt
gaggagttcattctcatgccaaatgtggcaaatctccaaaatgttggcgatcgcttatat
gatgaagctctttatgaggctgcaagaattatattccaatttatagcaaactgggccaag
ttggcaagcacactagtgaagttgaaacagttccaaagtgctgttgatgcagctcggaaa
gccaacagtgccaagacatggaaggaagtttgctttgcttgtgttgatgcagaggagttc
cgtctggctcagatatgtggtcttaacatcattatacaggtggatgatttggaggaggtc
agcgaatattaccagaacagaggatacttcaatgaattgatctctctcatggagagtggt
ttaggtttagaacgtgcacacatggggattttcacagagttgggagtgctgtatgctaga
tatcgtcctgagaaactcatggagcacattaaattgttctcaacccgtctcaacattccc
aagcttatccgagcatgtgatgaacagcaacactggaaggaacttacctatttgtacatt
caatatgatgaatttgataatgctgcaactaccattatgaaccattctccggaggcatgg
gatcacatgcaattcaaagatgttgctgtcaaagttgctaatgtagagctatattataag
gccgtgcatttctacttgcaagaacatcctgatcttatcaatgatcttctcaatgtgctg
gcacttcgtgtggaccatactcgtgttgttgacattatgcggaaggctggtcatttgctt
cttgtgaagccatacatgattgcagttcagagcaacaacgtgtctgctgtgaatgaggct
ttgaatcaaatttatgtagaagaggaggactatgaaagattgcgtgaatcaattgatttg
catgataactttgatcagattggccttgcacagaagattgagaaacatgagcttcttgaa
atgaggcgtgtggctgcgtacatttacaagaaggcaggaagatggaagcaatccattgca
ttgtcaaagaaagataacctttataaagatgccatggagacagcatcacagtctggtgat
cgtgaacttgcagaggagttgctggtttatttcattgaacagggcaagaaggaatgcttt
gcatcgtgcctctttgtttgttatgatttgattcggccagatgttgcccttgagcttgcc
tggatgaataatatgattgactttgctttcccgtacctgttgcagtttatccgtgaatac
acaggcaaagttgatgaactcgtgaagtacaaaattgaggcgcagaaagaagtcaaggcc
aaagagcaggaagagaaggatgtaattgctcagcagaacatgtatgctcagttacttcct
cttgctttgcctgcaccgcccatgcctggtatgggtggaccaacaatgggaggaggtttt
gctccaccaccacccatgggtggaatggggatgcctccaatgccaccttttggcatgcca
ccgatgggcagctactga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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