KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_706444

Entry

POPTR_706444 CDS T01077

Definition

hypothetical protein

Orthology

K12626

U6 snRNA-associated Sm-like protein LSm7

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop03018	RNA degradation
pop03040	Spliceosome

Module

pop_M00396	Lsm 2-8 complex
pop_M00397	Lsm 1-7 complex

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:pop03040]
Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:pop03018]

SSDB

Motif

Pfam:

LSM Gemin7

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA

NT seq 300 nt +upstreamnt +downstreamnt
atgtcagggaggaaagaaacagtattggatttggctaagttcgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtgacagggactttgaagggatatgaccaattacta
aaccttgtcctggatgaggcggtagaatttctaagagatgctgatgatccgctaaagacc
actgatcagacaaggcgccttggcctaattgtttgcaggggaactgctgtgatgctggtg
tctccaactgatggtacagatgagattgccaacccttttgtccagccagatggagcctag

All links

Pathway (4)   
   KEGG PATHWAY (2)   
   KEGG MODULE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (19)   

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