KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_817868

Entry

POPTR_817868 CDS T01077

Definition

hypothetical protein

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop03022	Basal transcription factors
pop03420	Nucleotide excision repair

Module

pop_M00290

Holo-TFIIH complex

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:pop03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:pop03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 449 aa
MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFFDGPVSG
KLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGVL
PRETMAAVVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQR
DRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTGEAY
NMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVVVE
TNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQ
NAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNG
LLWEDSKKMRVVVKAEIHMNMREFLRGQK

NT seq 1350 nt +upstreamnt +downstreamnt
atgcctcaagtgagaatcattgcaaagaatttcatggacatggtagcttccttaccagcc
atgaaactcgacacgctctatcaaaacgcattcatctgcgaagccatactcaggtcattg
ccgcctttagcgaagaaatatgtagtacaaattttgttttttgacggcccagtatcaggt
aaattgctggagcaatgggtgcttgctgatggggtcaccaaacatagagttgctattgat
cggttgattcagttgagaatttttattgaagtttctgacaagaaaagggagagtagttat
aaattaaaccagacgtttcaggctaatctacgaaagcatttaacaaatggtggagttttg
ccaagggaaacaatggctgcagttgtaaaactccctagcttggaggaattagatacctac
gcgcttgaacaatgggagtgttttttgctacttcttataagctctggccaagcagaaaag
ccaactagcttgagctcttccatgatgaaaatttttcagcggggtcttttgtctcagagg
gatagagatgctccaagattaactgagggtggttttcagtttttgctgatggatacaaat
gcacagctgtggtacatcatcagagaatatatcactaattctgaggagagaggtacagag
cctgcggatctgatttcttttcttctggagcttagctttcatgtcactggcgaggcatat
aatatgaatacattgactgagattcagagaaatactatcaaggaccttgcagaattggga
ttggttaaacttcagcagggaaggaaagagagttggtttatacctactaaattggctacg
aatctttcagtgagcttaacagattcatcatcacggaaacagggatatgttgttgtagaa
accaactttagattgtacgcgtactcatcatcaaagcttcattgtgaaattctacgtctt
ttctcaaagatagaatatcaacttccaaaccttatagttggagcaataacaaaagaaagt
ttgtatacagcttttgaaaatggcatcacatctgaccaaataatttcttttcttcagcag
aatgctcatcctcgtgtggcagagagattaccatcagttcctgaaaatgtcactgatcag
attagattgtgggaagcagatctgaacagggttgagataaccccctcgcatttctatgat
gagtttccatccagggatacatttgaggctgcttgtgactttgcacgggagtggaatggt
ttgctgtgggaggattcaaagaaaatgcgggttgtagtgaaggcagaaattcacatgaac
atgcgagagtttcttcgtggtcaaaagtag

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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