KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_819048

Entry

POPTR_819048 CDS T01077

Definition

hypothetical protein

Orthology

K03124

transcription initiation factor TFIIB

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop03022

Basal transcription factors

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:pop03022]

SSDB

Motif

Pfam:

TFIIB TF_Zn_Ribbon Cyclin_N K-cyclin_vir_C Ribosomal_S27e

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 312 aa
MGDAFCSDCKKHTEVVCDHSAGDTVCSECGLVLESHSIDETSEWRIFANESGDNDPVRVG
GPTNPLLTDGGLSTVIAKPNGASGDFLSTSLGRWQNRGSNPDRGLILAFKTIATMSDRLG
LVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATK
KEIGRAKEYIVKQLGLEAGQSVEMGTIHAGDFMRRFCSNLGMSNHTVKAATEAVKTSEQF
DIRRSPISIAAAVIYIITQLSDDKKPLRDISLATGVAEGTIRNSYKDLYPHVSKIIPAWY
ANEEDLKNLSSP

NT seq 939 nt +upstreamnt +downstreamnt
atgggggacgctttctgttcagattgtaagaaacacacagaggtagtatgcgaccattca
gcaggagacacagtgtgttcagagtgtggtcttgtcttagaatctcactcgatcgatgaa
acatcagagtggagaatctttgcgaatgaatcaggagataatgatccagttcgtgtcggt
ggacctactaatcctttgttaacagacggtggcctttctactgttattgctaaacctaat
ggtgcttccggagatttcttgtcgacttctcttggtcggtggcagaaccgtgggtccaat
cctgatcgtgggttgattctggcttttaaaaccattgcaaccatgtctgacaggttgggc
cttgttgcaacaatcaaggatcgggctaatgagatctataagaaggtggaggatcaaaag
tccagtagaggaaggaatcaggatgctttattggctgcttgcctctatattgcttgtcga
caagaagacaagccccgaaccgtaaaggaaatttgctctgtcgccaatggagccacaaag
aaggaaattggccgagcaaaagaatacatagtgaaacaactgggtttggaggcaggtcag
tctgtggagatgggaactatacatgctggggattttatgagacgtttctgttccaatctt
ggaatgtctaatcatacagttaaagctgccacagaagctgttaagacgtcagaacagttt
gatataaggaggagtcctatatcaatcgcagcagctgttatttatataataactcagctt
tcagacgacaagaagcctctccgagatatttcactagcaactggagttgctgaaggaaca
atcaggaattcgtacaaggatctttatccccacgtatcaaagataataccagcatggtat
gcgaatgaggaagatctgaagaaccttagcagtccttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system