KEGG T01077: POPTR

Populus trichocarpa (black cottonwood): POPTR_830990

Entry

POPTR_830990 CDS T01077

Definition

hypothetical protein

Orthology

K01190

beta-galactosidase [EC:3.2.1.23]

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop00052	Galactose metabolism
pop00511	Other glycan degradation
pop00600	Sphingolipid metabolism
pop01100	Metabolic pathways

Class

Metabolism; Carbohydrate metabolism; Galactose metabolism [PATH:pop00052]
Metabolism; Lipid metabolism; Sphingolipid metabolism [PATH:pop00600]
Metabolism; Glycan biosynthesis and metabolism; Other glycan degradation [PATH:pop00511]

SSDB

Motif

Pfam:

Glyco_hydro_2_C Bgal_small_N Glyco_hydro_2_N Glyco_hydro_2 Glyco_hydro_72

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 1113 aa
MASLVAQLVSPVETGHKVWQDQAFIKWRKRDPHVTLHCHESVEGSLRYWYQRNKVDHLVS
KSAVWNDDAVQGALDSAAFWVKDLPFVKSLSGFWRFFLAPGPDSVPKKFYDAEFEDSEWN
TLPVPSNWELHGYDRPIYANVLYPFPVDPPRVPDDNPTGCYRTYFDLPQGWQDRRIFLHF
EAVDSAFCAWINGVAVGYSQDSRLPAEFEITDYCYPCGSGKKNLLAVQVFRWSDGSYLED
QDHWWMSGIHRDVLLLSKAQVFIADYFFKSNLAENFTYADIEVEVKIESALEIPRDKIFD
NFTIEAALYDTGSWYNSEESPDLLSSNVANLKLTHSPMGILGFLGNFLEGKLEKPKLWSA
EQPNLYILVLSLKDATGQVVDCESCLVGIRQISKAPKQLLVNGCPVIIRGVNRHEHHPRV
GKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFHLC
EHLKHPTQEQSWAAAMMDRVISMVERDKNHACIISWSLGNESSYGPNHSAAAGWIRERDP
SRLVHYEGGGSRTTSTDIICPMYMRVWDIVKIAKDPTEPRPLILCEYSHAMGNSSGNIRE
YWDAIDSTFGLQGGFIWEWVDQALLKESGDGRKHWAYGGDFGDTPNDLNFCLNGLTWPDR
TPHPALEEVKYVYQPIKVSLEESTIKITNTHFFQTTQGLEFSWTVHGDGYEFGSGILSLP
LTEPQSSYKLEWELGPWYPLLASSFAEEIFLTITTRLLHSTHWVEAGHVISSTQVQLPTR
QKIMPHVIKTTDAKVFSETLGDTVRVSQLNVWEITWNIQTGSIESWKVGGVPVIKEGIIP
CFWRAPTDNDKGGEKDSYYSRWKAAGIDSLVFQTKSCSVKSTTDNLVKIEVIYVGVPSCE
ERSLSESTNATALITVNMIYTIYSSGDLIIECSAIPSSELPPLPRVGVELHLEKSVDQIK
WYGRGPFECYPDRKAAAHVGVYEQNVGDMHVPYIVPVECSGRADVRWVTFQNKDGVGIFA
STYGSSPPMQMSASYYSTAELDRATHHEELVQGNDIEVHLDHKHMGLGGDDSWSPCVHDK
YLVPAVPCSFSIRLCPITAATSGLEIYKSQFLN

NT seq 3342 nt +upstreamnt +downstreamnt
atggcttctttggtagcacaactggtgtctccagtggaaactggacataaagtttggcaa
gaccaggcttttattaagtggagaaagagagatcctcatgtcactttgcactgccatgaa
tctgttgaaggatctcttagatactggtatcaacgcaacaaagtggatcatttggtatct
aaatctgctgtttggaatgatgatgctgttcaaggggctcttgattctgcagccttttgg
gttaaggatttgccttttgttaaatctttgtctggcttttggagatttttcttggctcct
ggccctgacagtgttcctaagaaattttatgacgctgaatttgaggactcagagtggaac
actttgcctgttccttcaaattgggaattgcatggatacgatcgacctatttatgccaat
gtattatatccatttccagtagatcctcctcgtgttcctgatgataatcctactggatgc
taccgaacatactttgaccttcctcaggggtggcaagatcgaaggattttcttgcatttt
gaagctgttgattcagcattctgtgcttggataaatggggttgctgtgggatacagtcag
gatagtaggctacctgccgagtttgaaattacagattactgttatccatgtggttctggc
aagaagaatcttttagccgttcaagtctttagatggagtgatgggtcttaccttgaagat
caagaccattggtggatgtcaggtattcacagagacgtgcttcttctttccaaggctcag
gtattcattgcagactactttttcaaatcaaacctggccgagaattttacttatgcagat
atagaggttgaagtgaaaatagaaagtgctctagaaattccaagagacaaaatttttgac
aactttaccatagaagccgcattatatgacaccggaagctggtacaacagtgaagaatct
cctgatctgctttcatccaatgtggccaatttaaagctcactcactcccctatgggaatt
ctaggatttctgggtaatttccttgaagggaaactcgaaaagcccaagctttggtctgca
gagcagccaaacttgtacattcttgttctctccctcaaagatgcaactgggcaagtagtt
gactgtgaatcatgcctggtaggcataagacaaatatcaaaggctccaaaacagctactt
gttaacgggtgtccagttataataagaggtgtgaacaggcacgaacatcatccacgtgtg
gggaagacaaatatagagtcgtgtatgattaaggatctggttctaatgaagcaaaacaat
atgaatgctgtgaggaacagtcattatccccaacatcctcgttggtatgagttgtgcgat
ctttttggcttgtatatgatagatgaagccaacattgagacacatggttttcatctttgc
gaacatctgaagcatcctactcaggaacaaagttgggctgctgcaatgatggatcgtgtg
ataagcatggtggagagggacaaaaatcatgcatgcataatttcttggtctttaggaaat
gagtcctcatatggacctaatcattctgctgcagccggttggattcgtgaaagggacccc
tcacggctggtgcactatgaaggaggtggatccagaacgacatccactgacatcatctgc
ccgatgtatatgcgtgtttgggacatagtgaagattgcaaaagacccaactgaaccacgc
cctttgatattgtgcgagtattcacatgcaatggggaatagcagtgggaatatacgtgaa
tattgggacgcaattgatagcacatttggtctacaaggcggctttatctgggagtgggtt
gaccaggcgttattgaaggaaagtggagatggtagaaaacactgggcttatggaggtgac
tttggggatacacctaatgatctgaacttttgtcttaatggtcttacatggccagatcgt
actcctcatcctgcattagaagaagttaagtatgtttatcagccaatcaaagtttcacta
gaggaaagcacaataaagataaccaacacccatttctttcaaactacacaaggtttagag
tttagctggactgtccacggtgatggatatgaatttggatctggaattctctctcttcca
ctgacagaacctcagagcagttacaagttagaatgggagttaggtccatggtatcctcta
ttggcttcatcttttgcagaagaaatttttttaacaataactactagactcctgcattcc
acacattgggttgaagctggtcatgttatttcatctacgcaagtccagttgcctaccaga
caaaagatcatgcctcatgttatcaaaactaccgatgctaaagtctttagtgaaactctt
ggagatacagttagagttagccagctgaacgtttgggagataacatggaacattcagact
ggaagtattgaaagctggaaggttggaggagttcctgttataaaggaaggcataatccca
tgcttctggagagcacctacagataatgacaaaggtggagaaaaagacagttattactcc
cggtggaaagcagctggtattgatagccttgtatttcagacaaaaagttgttctgtgaag
agcacaaccgacaatcttgtgaaaatagaggtcatttatgttggtgtcccaagttgtgag
gaacgctccttatctgaatctacaaatgcaacagctttaatcacagttaatatgatctac
acaatttatagttctggggacttgattattgaatgcagtgcaattccaagttctgagctt
ccacctttgcctcgagtgggagttgaattgcacttggaaaaatcggtggatcagattaaa
tggtatggaagagggccatttgaatgttatccagatagaaaagcagcagcccatgttggg
gtctatgagcagaatgtgggtgacatgcatgttccttacattgtccctgtagaatgttct
ggtagagcagatgttagatgggtgacatttcagaacaaggatggagtaggcatatttgct
tcaacttatggcagctccccacctatgcaaatgagtgctagttactactccacagcagaa
cttgaccgagcgacacaccacgaagaactcgttcaaggaaatgatattgaggtgcatctt
gaccacaaacatatgggattgggtggagatgatagctggtcaccatgtgtccatgacaag
tatctagttcctgctgtgccgtgctccttttctatcaggttgtgtccaattactgcagct
acatctggccttgagatatacaaatcccagtttctgaactaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (6)   
   KEGG ENZYME (1)   
   KEGG REACTION (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-POP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (35)   

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