KEGG   Pseudomonas oryzihabitans: APT59_16555
Entry
APT59_16555       CDS       T04267                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
por  Pseudomonas oryzihabitans
Pathway
por03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:por00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    APT59_16555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:por03400]
    APT59_16555
Enzymes [BR:por01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     APT59_16555
DNA repair and recombination proteins [BR:por03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      APT59_16555
SSDB
Motif
Pfam: TRCF UvrB_inter DEAD MFD_D3 Helicase_C CarD_TRCF_RID ResIII AroM UB2H ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: ALZ85735
UniProt: A0A0U4VRQ8
Position
3627357..3630806
AA seq 1149 aa
MSVLRTPSIPETAGRQQWGNLPGAALALAIAEAAKAATRRFTLLITQDSQTADRLEQELR
FFAPELPVLNFPDWETLPYDVFSPHQDIISQRVATLYRLPELSHGILVVPLATALHRLAP
TRFLLGSSLVLDVGQRLDVEVTRARLEAAGYRYVDTVYEHGEFAVRGALIDLFPMGSRLP
YRIDLFDDEIETLRTFDPETQRSIDKVDSIRLLPAREFPLHKEAVTGFRARFRERFDVDY
RRCPIYQDLASGITPAGIEYYLPLFFDETSTLFDYLPANTQVFSLPGIEQAAEQFWTDVR
TRYEDRRVDPERPLLPPADVFLPVEDCFARLKSWPRVVIGADDLESGVGRERFTARALPD
LAIDAKASQPLAALEHFITDFPGRVLFTAESAGRREVLLDLLARLNLRPGQVEGWAAFQA
SAERIAIALAPLDEGLVLDEAGVALIPENPLFGQRIMQRRRREKGRDAGENVIKNLTELR
EGAPVVHIDHGVGRYMGLITLELDDQPQEFLLLEYADDAKLYVPVANLHLIARYSGTDDA
LAPLHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFKDPAADYATFSAGFP
FEETPDQQAAIEAVHKDMLAGTPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVRVEVMSRFKSTQEVAAAARELADGKIDIIIGTHKLLQGDV
KFKDLGLAIIDEEHRFGVRQKEQLKSLRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEEQNAVIKEALLRELLRGGQVYFLHNEVKTIEKRARELAELVPEARV
GIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPNANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRKGMTPDAEKRLEAIAGAQDLGAGFILATHDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEKPLGGGPDINMRVPALIPEDYLP
DVHARLILYKRIASAPDEDALKELQVEMIDRFGLLPEPTKNLVRLTLLKLRAEGLGIVKV
DAGPQGGRLEFAADTQVDPLVLVKMIQAQPKKYRLEGATLFKFQVPMERAEERFNVLEAL
FDRLTPAAS
NT seq 3450 nt   +upstreamnt  +downstreamnt
gtgtcagttttgcgtaccccgtcaattcctgaaaccgccggtcgccagcagtggggcaac
ctacccggcgccgcgctagccctcgccatcgctgaagccgccaaggccgcgacacgccgc
ttcaccctgctgatcacccaggacagccagaccgctgatcgcctggagcaggaactgcgc
ttcttcgcccccgaattgccggtgctgaatttccccgattgggagacgctgccctacgat
gtcttctcgccgcaccaggacatcatctcccagcgcgtcgctaccctttatcggctgccg
gagctctcccacggcattttggtagtccctctggcgactgccctacaccgcctggcaccc
acgcggttcctgctcggcagcagcctggtgctcgacgtcggccagcggctggacgtggaa
gtcacccgcgcgcgcctggaagcggccggctatagatatgtggatacggtgtacgaacac
ggcgagttcgccgtgcgcggcgccctgatcgatctctttcccatgggcagcaggctgccc
taccggatcgacctgttcgacgacgagatcgagacgctgcgcaccttcgacccggagacg
cagcgttccatcgacaaggtcgacagcatccgcctcctgccggcacgggagttcccgctg
cacaaggaagccgtgaccggctttcgcgcgcgcttccgcgaacgcttcgacgtcgactat
cgccgctgccccatctatcaggatctggccagcggcatcactccggcgggtatcgagtac
tacctgccgctgttcttcgacgagacttccaccctcttcgactatctgccggccaacacc
caggtgttttccctgccgggcatcgagcaggccgccgaacagttctggaccgatgtgcgc
acccgttacgaggaccgccgggtcgatccggagcgaccgctgctgccgccggccgatgtc
ttcctgccggtggaagactgcttcgcccgtctgaagagctggccgcgggtggtcataggc
gcagatgacctggagtccggcgtgggccgcgagcgcttcacggcgcgggcgctgccggat
ctagccatcgatgccaaggccagccagcccctggcggcgctggagcacttcatcaccgac
ttccccggtcgcgtgttgttcaccgcggaaagcgccggccgccgcgaggtgttgctggac
ctcctggcccggctgaacctgcgccccggtcaggtcgaaggctgggcagcctttcaggcc
agcgccgaacgtatcgccatcgccctggcaccgctggacgaaggcctggtactggatgag
gccggcgtcgccctgatcccggaaaacccgctgttcggccagcgcatcatgcagcgccgc
cgccgcgagaagggtcgtgacgccggcgagaacgtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtgggccgctacatgggtttgatcacc
ctggagctggacgatcagccccaggaattcctgctgctcgaatatgccgacgacgccaag
ctgtatgtgccggtggccaacctgcacctgatcgcccgctactcgggcaccgacgacgcc
ctggcgcccttgcacaagctgggctccgaaacctggcagaaggccaagcgcaaggccgcc
gaacaggtacgggacgtggccgccgagctgctcgacatctatgcccgccgcgccgcgcgc
aagggctatgccttcaaggacccggcagccgactacgccaccttctccgccggcttcccc
ttcgaggagaccccggaccagcaggctgccatcgaggcggtgcacaaggacatgctggcg
ggcacgcccatggatcgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgggcggccttcatcgccgtgcatggcgggcgccaggtggcggtgctggtccccacc
accctgctcgcccaacagcactacaacagcttccgcgaccgcttcgccgactggccggtg
cgggtcgaggtgatgagccgcttcaagtcgacccaggaggtcgccgccgccgcgcgcgag
ctggccgacggcaagatcgacatcatcatcggcacccacaagctcctgcagggcgatgtg
aagttcaaggacctgggcctggccatcatcgacgaagaacaccgtttcggagtgcgacag
aaggagcagctcaagtcgctacgcagcgaagtggacatcctcaccctcaccgccacgccc
attccgcgcaccctgaacatggccgtggcgggcatgcgcgacctgtccatcatcgccacc
ccgcccgcgcggcgtctctcggtgcgcaccttcgtcatggaggagcagaacgcggtgatc
aaggaagccctgctgcgcgaactcctgcgtggcggccaggtgtacttcctgcacaacgag
gtcaagaccatcgagaagcgcgcccgcgaactggccgaactggtgcccgaggcccgcgtg
ggcatcggccacgggcagatgcgcgaacgcgatctcgaacaggtgatgagcgacttctac
cacaagagattcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgccc
aacgccaacaccatcatcatcgaacgcgccgacaagttcggcctggcccagctgcaccag
ctgcgtggccgggtcggccgcagccaccaccaggcctacgcctacctgctcacgccgcca
cgcaagggcatgaccccggacgccgagaagcgcctggaggccatcgctggcgcccaggac
ctgggggccggcttcatcctggcgacccacgacctggagatccgcggcgccggcgaactg
ctcggcgaaggccagagcggccagatccaggcagtgggtttcaccctctacatggaaatg
ctggagcgtgcggtcaaggccattcgcaagggcgagcaacccaatctcgagaagcccttg
gggggcggtccggacatcaacatgcgcgtccccgccctgatcccggaggactacctgccc
gacgtccatgcgcggctgatcctctacaagcgcatcgcctcggcgccggacgaagacgcc
ctcaaggaattgcaggtggagatgatcgaccgcttcgggctcctgccggaaccgaccaag
aacctggtgcgcctgacactgctcaagctacgtgcggaaggcctgggcatcgtcaaggtg
gatgcggggccccagggcggacgcctggagttcgctgccgacacccaggtggatccgctg
gtgctggtgaagatgatccaggcgcagccgaagaagtaccggctggagggcgcgaccctg
ttcaagttccaggtaccgatggaacgcgccgaagaacgcttcaacgtgctcgaagcgctc
ttcgatcgcctgacgccggccgccagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system