KEGG   Porphyrobacter sp. LM 6: BG023_111943
Entry
BG023_111943      CDS       T04468                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
porl  Porphyrobacter sp. LM 6
Pathway
porl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:porl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BG023_111943
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:porl03019]
    BG023_111943
   03016 Transfer RNA biogenesis [BR:porl03016]
    BG023_111943
Enzymes [BR:porl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BG023_111943
Messenger RNA biogenesis [BR:porl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BG023_111943
Transfer RNA biogenesis [BR:porl03016]
 Prokaryotic type
  tRNA degradation factors
   BG023_111943
SSDB
Motif
Pfam: RNB CSD2 S1
Other DBs
NCBI-ProteinID: AOL94861
UniProt: A0A1D7NM67
Position
1998643..2000952
AA seq 769 aa
MPKPPKLPQGMPTRQQVLDFIQSSDIPAGKREIAKAFGLKGQEKIKLKALLKDMAEEGLI
DGSKSAFHRMGGVPKVTTLRIVDVDEGDLIAEPDNWDPEAPGKPPRLVIREPKMPRGAKS
AKRPPALRRGDRVLARTEETERGLIAHVMKKLPSRTEGLMGIVEIDKTGKAWLAPVDKRV
RQSTPIADRGEAEEGQLVIAERVGRSERAGVKVVEVVGDPLAPRSFSLIAIAKHGIPHIF
PEEVLEEAPRAAKLKLSEKAREDLRHLPIVAIDPADARDHDDAIWAEPDGQGGFNAVVAI
ADVSFYVRPGSALDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHLHI
SAEGKVTSFRFTRALVRIAHNIAYEDAQKAVDDGNPPAFLANLWAAWKALAAARHARDPL
ELELPERRVVLDEQGRIASIAIRERLDAHRVVEDFMIAANVAAAKALEAKTAPVVYRIHE
PPSREKLIALRDYLATMGKKLALGQVVTPGLFNRMLKDISDEAEKALVMEAVLRSQTQAY
YGPANAGHFGLSLGSYAHFTSPIRRYSDLLVHRALVDAYKLEQPAPPGSIPATSGLSDRD
RASLQQVSDAISQTERRAMEAERDTIDRYVAAWLSARVGEVFDTRITGVQAFGFFATIVG
LGGDGLVPISTLGGEYFRHDEAAQALVGSHSGTTYASGDRLKLKLAEANPLTGALKFVLP
DADMGRIETRGARPQERRKGPGGPPKTAGKFMVGKRGRPGNIRHQGRKK
NT seq 2310 nt   +upstreamnt  +downstreamnt
atgcccaagccccccaaactcccccaagggatgccgacgcgccagcaggtgctcgacttc
atccagtcctccgacattcccgcgggcaagcgcgagatcgccaaggccttcgggctgaag
gggcaggaaaagatcaagctcaaggccctgctcaaagacatggccgaggaggggttgatc
gacggttcgaaaagcgcctttcaccgcatgggcggggtgccgaaggtgacgacgctcagg
atcgtcgatgtggacgagggcgatctgattgccgagcccgacaattgggatcccgaagcc
cccggcaagccaccccgtctggtcatccgcgagccgaaaatgcccagaggtgctaaatct
gccaagcgcccgccggcgctgcggcgcggtgaccgcgtgctcgcccgcaccgaggagacc
gagcggggcctcatcgcccatgtgatgaagaaactgccctcgcgaaccgaagggctgatg
ggcatcgtcgagatcgacaagaccggcaaggcctggctcgcgccggtcgacaagcgcgtg
cgccagtccactcccatcgccgatcgcggcgaggccgaagaaggccagctggtgattgcc
gaacgcgtgggccgttcggaacgcgcaggggtgaaggtggtggaggtggtgggcgatccg
ctcgccccgcgtagcttcagcctcatcgcgattgccaagcacggcatcccgcacatcttc
cccgaagaggtgctggaggaagccccgcgtgcggccaagctcaagctttcggaaaaggcg
cgcgaagacctcaggcacctgccgattgtcgcgatcgacccggctgacgcgcgcgaccat
gacgatgcgatctgggccgagcccgacgggcagggcggcttcaacgcggtggtcgcgatt
gccgatgtgtccttctacgtccgccccggctcggcgctcgaccgcgaggcgaggaaacgc
ggcaattcggtctatttccctgaccgcgtcgtgccgatgctgcccgaggtgctctcggcc
gatgtctgctctttgaaggaaggcgaggaccgcgcggcgatggcgtgtcacctgcacatc
agcgcagagggcaaggtcaccagcttccgcttcacccgcgcactggttcggatcgcgcac
aacatcgcttacgaggatgcgcagaaggccgtggacgatggcaacccgcccgcgtttctc
gccaacctttgggccgcgtggaaggcgctcgccgccgcacgccatgcccgcgatccgctc
gagcttgaactccccgagcgccgcgtggtgctcgacgagcagggacgcatcgcctcgatc
gcgatccgcgaacggctcgatgcccaccgcgtggtcgaggatttcatgatcgccgccaac
gtcgctgcggccaaggcactagaagccaagactgcgccggtcgtctatcgcattcacgaa
ccgccgagccgcgagaagctgatcgcgctgcgcgattatctcgcgacgatgggcaagaag
ctggcgctggggcaggtcgtcactcccggcctgttcaaccggatgctcaaggacatcagc
gacgaggccgaaaaagcgttggtgatggaagcggtgctccggagccagacgcaggcctat
tacgggcctgccaatgccgggcatttcgggctgagcctcgggtcttacgcgcacttcacc
tcgccgatccgccgctattccgatcttctggtgcaccgcgcgctggtcgatgcctacaag
ctggagcagcccgccccaccgggttcgatccccgcgaccagcggcctttcggaccgcgac
cgcgcctcgctccagcaggtctcagacgcgatcagccagaccgagcgccgcgcgatggaa
gccgagcgcgataccatcgaccgctatgtcgcggcatggctgtcggcgcgggtgggcgag
gtgttcgatacccgcatcaccggggtgcaggccttcggctttttcgccaccatcgtcggg
ctcggcggggatgggctggtgccgatctcgacgctgggcggcgaatacttccgccatgat
gaagccgcgcaggcgctggtcggttcgcacagcgggacgacctatgccagcggcgacagg
ctgaagctcaagctcgccgaagccaatccgctaaccggcgcgctcaaattcgtgttgccg
gatgcggatatgggccgcatcgaaacacgcggcgcaaggccgcaagaacggcgcaagggg
ccgggtgggcctccgaaaacggccggcaagttcatggtgggcaagcgcggtcgtccgggc
aatatccgccatcagggacgcaagaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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