KEGG   Porphyrobacter sp. LM 6: BG023_111961
Entry
BG023_111961      CDS       T04468                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
porl  Porphyrobacter sp. LM 6
Pathway
porl02024  Quorum sensing
porl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:porl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BG023_111961
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BG023_111961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:porl03019]
    BG023_111961
   03036 Chromosome and associated proteins [BR:porl03036]
    BG023_111961
Messenger RNA biogenesis [BR:porl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BG023_111961
Chromosome and associated proteins [BR:porl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BG023_111961
SSDB
Motif
Pfam: Hfq Polysacc_deac_1
Other DBs
NCBI-ProteinID: AOL94878
UniProt: A0A1D7NMA7
Position
complement(2016014..2016595)
AA seq 193 aa
MSNGRTLSPRPVSRPAAPSEPRGGASGGGATRQANLQDAFLNLLRKNKIPVTMFLVKGVK
LQGIVTWFDNFSILLRRDGQSQLVYKHAISTIMPAQSLDPTVFGVPGGRKQKMLQDVFLS
RVAEAEVQVTMFLVNGVMLQGRIAAYDLFCMLLERDGAVQLAYKHAVSTIQPAGPVDLSV
DDDDDGDDDGADD
NT seq 582 nt   +upstreamnt  +downstreamnt
atgtccaacggccgaacgctctctcctcgtccggtttcccgtccagcagcgccgagcgag
cctcggggcggtgccagcggtggcggtgccacgcgccaggccaatcttcaggacgccttc
ctcaatctgctgcgcaagaacaagatcccggtgaccatgttcctggtcaagggcgttaag
ttgcaggggatcgtcacctggttcgacaatttctcgatcctgctacggcgcgatggccaa
tcgcagctggtctacaagcacgcgatcagcacgatcatgcccgcgcaatcgctcgacccg
acggtgtttggcgttccgggcggtcgcaagcagaagatgctccaggacgtgttcctcagc
cgcgtggccgaagccgaagtgcaggtgacgatgttcctcgtgaacggcgtcatgctccag
ggccggatcgccgcctatgacctgttctgtatgctgctcgagcgcgatggcgcggtgcag
ctcgcttacaagcacgccgtctcgaccatccagcccgccgggccggttgatctcagcgtc
gatgatgacgacgacggtgatgatgacggggcagacgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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