KEGG   Paenibacillus sp. 32O-W: IJ21_01550
Entry
IJ21_01550        CDS       T04219                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
pow  Paenibacillus sp. 32O-W
Pathway
pow03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pow00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IJ21_01550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pow03019]
    IJ21_01550
   03016 Transfer RNA biogenesis [BR:pow03016]
    IJ21_01550
Enzymes [BR:pow01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     IJ21_01550
Messenger RNA biogenesis [BR:pow03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     IJ21_01550
Transfer RNA biogenesis [BR:pow03016]
 Prokaryotic type
  tRNA degradation factors
   IJ21_01550
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 CSD OB_Dis3 TFIIE_beta
Other DBs
NCBI-ProteinID: ALS25609
UniProt: A0A0U2UHA0
Position
complement(157962..160643)
AA seq 893 aa
MTITERDVLEFMRETAYKPMTYQELEQHFGIQDAGEFKAFLQQLNRLEAEGQIIRTRNDR
YGVPERMNLLRGKLQSHPKGFAFLLTDDDEHPDVYIHANDLKGAMNGDTVLVRITSKSEG
GGRMEGEVVRIVQRAVKEIVGTFDNHEYYGFVIPDDKRIQKDIFVPKGSFGGAVTGQKVV
VRIVKYPEGKRTAAEGEIVEILGHKDDPGVDILSVIRKHQLPEAFPEEVLAEADAVPDTI
SEDEIAAQGRRDLRNKVIVTIDGEDAKDLDDAVHVERLDNGNYVLGVHIADVGYYVKEKS
ALDQEAYRRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTLSCEMEFDGKTLKRVRHD
IYTSVIRTTERMTYTNVRRILTATEEEPETELMERYAGLIDMFRLMEELAMKLRRKRMQR
GAIDFDFQEAKVIVDEQGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRLPFLYR
VHEEPDSEKLLHFLQFASNFGYVVKGKSNSIHPRALQSLLEEIRGAKEETVISTMLLRSM
KQAKYAAESLGHFGLAAEFYTHFTSPIRRYPDLVIHRIIREVLENGGMLPEHRIDALAAR
MPDIAQQSSERERVAVDAERDTERMKKCEYMLDKIDEEFDGIVSGVTSFGMFVELDNTVE
GLIRLSSLADDYYHFDELHMVLIGERTSKVYRIGDEVRIRVARVNMDDYTIDFEMVDVRP
RGRYRGYAEAGYGGSRKGGRRGAAGGGRYGRDAGRGEAPARGGKPRKNRRGGDAAAADEA
QREPLSEAGAREAGLGEDAHPSHGDGEVRKDMWGLPIPGSPRSGAARGRNGAPRGGRAAA
GSGASRRKKTSPTGIFVGDGGGGAAAGAGAKPRKKKRGGAGNGTAAFVRKKRK
NT seq 2682 nt   +upstreamnt  +downstreamnt
ttgacgattacggagcgcgatgtgctggagtttatgcgggagacggcatacaagccgatg
acgtatcaggagttggagcagcatttcggcattcaggatgccggcgaatttaaagcgttt
ctgcagcagttgaaccggctggaagcggaagggcaaattatacggacccgcaatgaccgc
tacggcgtgccggagcggatgaatttgcttcgcggaaagctgcagtcgcatccgaaaggg
tttgcctttctgctgacggatgacgacgagcacccggatgtctatattcatgccaatgat
ttgaaaggcgccatgaacggggatacggtgcttgtccggatcacgtccaaaagcgaaggc
ggcggacggatggaaggcgaggttgtccgaattgtgcagcgggccgtgaaagagatcgtc
ggcacgttcgacaaccatgaatattacggatttgttattccggatgacaaacggattcag
aaagatattttcgttccgaagggatcgtttggcggagcggtaacggggcagaaggtcgtc
gtccgcatcgtgaaatacccggaaggcaaacggacggccgccgaaggggaaattgtggag
attctcggccataaggacgatccgggggtcgacattttgtcggtgattcgcaagcatcag
ctgccggaagcttttccggaggaagtgctggcagaggcggatgcggttcccgacacaatc
tcggaagatgaaatcgccgcccagggtcgccgggatttgcggaacaaagtcattgtgacg
atcgacggcgaagatgccaaggatctcgatgacgcggttcatgtggaacggctggacaac
ggaaactatgtgctcggcgtccatattgccgatgtaggctattatgtgaaggagaaatcg
gcgctcgatcaggaagcgtaccggcggggctgcagcgtctacctcgtcgaccgggtcatt
ccgatgctgcctcaccggctctcgaacggcatctgttcgctcaatccgaaggtggatcgg
ctgacgctgtcgtgcgaaatggaattcgacgggaagacgttgaagcgggtgcggcacgat
atttatacgagcgtcattcggacgacggaacggatgacttatacgaatgtgcgccgcata
ctgaccgcgacggaagaggagccggagaccgagctgatggaacggtatgccgggctgatc
gacatgttccggctgatggaagagctcgcgatgaagcttcgccgcaagcggatgcagcgg
ggcgcgatcgatttcgattttcaggaagcgaaggtcatcgtcgatgaacaaggcaaagcg
gtcgatatcgtcaagcgggaacgatcggtcgccgagcagattatcgaggagtttatgctg
gcggcgaatgagacggttgcggaacattttcactggctgcgcctgccgtttctgtaccgg
gtccacgaggagccggacagtgaaaagctgctacacttcctgcagtttgcttccaatttc
ggctatgtggtgaaagggaagagcaattcgatccatccgcgtgcgctgcagtcgctgctc
gaggaaattcgcggtgcgaaggaagagacggtcatttcgacgatgctgctccgctcgatg
aagcaggcgaagtacgcggcggaaagcctcgggcatttcgggctcgcggctgagttttac
acccatttcacgtcgccgattcgccgttatccggacctcgtcattcaccggattatccgc
gaggtgctggagaacggcgggatgctgccggagcatcgcatcgatgcgctggccgcgagg
atgccggacattgcgcagcaatcgtcggagcgggagcgtgtggcggttgacgcggagcgg
gatacggagcggatgaagaaatgcgagtacatgctggataagatcgacgaggaatttgac
ggcattgtcagcggcgttaccagcttcggcatgttcgtggagctggacaatacggtcgaa
gggctcatccgcctcagcagcctggccgacgattattatcatttcgatgagctgcatatg
gtgctgatcggcgagcgcacctcgaaggtgtaccggatcggcgacgaggtgcgtattcgc
gtggcgcgcgtcaatatggacgactatacgatcgatttcgagatggtcgacgtccggccg
cgcggccgttatcgcggctacgccgaagcgggctacggcggctcgcgcaagggcggccgc
cgcggcgctgccggcggcgggcgatacggccgcgatgcgggcaggggcgaagcgcccgca
cgcggagggaagccgcgcaagaataggcgcggcggagatgccgctgcggcggatgaggcg
cagcgggagccgttgtccgaggccggggcgcgggaggccggcctcggcgaggatgcgcac
ccgagccatggcgatggcgaggtgcgcaaggatatgtgggggctgccgattccgggcagc
ccacgcagcggcgccgcgcgcggccggaacggcgcgccgcgcggcggccgtgcggcggcg
gggagcggtgcatcccgccgcaagaagacgtcgccgacggggattttcgtcggcgacggc
gggggcggcgcggccgccggggccggggcgaagccgcgcaagaagaagcggggcggcgcc
ggcaacggtacggcggcgttcgtccgcaagaagcggaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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