KEGG   Komagataella phaffii: PAS_FragB_0056
Entry
PAS_FragB_0056    CDS       T01092                                 
Name
(RefSeq) ATP-dependent helicase
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
ppa  Komagataella phaffii
Pathway
ppa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PAS_FragB_0056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppa03032]
    PAS_FragB_0056
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_FragB_0056
Enzymes [BR:ppa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PAS_FragB_0056
DNA replication proteins [BR:ppa03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    PAS_FragB_0056
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     PAS_FragB_0056
    Bloom's syndrome complex (BTR)
     PAS_FragB_0056
   FA (Fanconi anemia) pathway
     PAS_FragB_0056
SSDB
Motif
Pfam: DEAD RQC Helicase_C RecQ_Zn_bind Helicase_Sgs1 HRDC DUF3907
Other DBs
NCBI-GeneID: 8197497
NCBI-ProteinID: XP_002490868
UniProt: C4QZB4
Position
1:complement(2759410..2763318)
AA seq 1302 aa
MAFTTNIREHLGWLEKTKENIPPKNVLERLQNVAKESGSTIRLTAPLAASPSLNKNSAPL
QPQTQTQSNGATGPVENSLSALHTVDSTRRVSTLKSYKPQMAPITRNSAQQLPQAIDLTD
DVSDEEHLVPSKENLTQKRTKRAEQSKSDAPAKRAKVTKSPFVEPTTTKSNPSLNKLKKQ
ELVDILANQETLMEMFQSKIQILEERDAITNSRKLSEEDKCSKRAELQLEIDRLDLQITN
LMTTISNLKGKKHNTTEKTTEQEGNNDSNAPEIDNHPVNPESPLSPTQPQPHNPFREPYP
DSLLDDFSDADIDLTFGDSIADVTNELEHNDDSSRIQTQEHEILPMDEEEQMLLQNFVVH
EDGRSNKGSVFEDEMSEDADYVEYTKSVDGDFTEHQIPRVSKEELENLKDSVDEEVDIID
DSAPQNDYDVLKGVEFSDDEEIESDSSIEVIDVVQYNEEREINTQNIKKELQTEELFDLN
SDDEHELVNLSGGKTDSTVGLSSHNEELPQFEDSHRRFSTETHKYPWTDEVFYILRETFK
LESFRSNQLEAVNATLSGEDVFVLMPTGGGKSLCYQLPALVQSGSTRGTTVVVSPLISLM
QDQVEHLIANKIKAGMINSKGTVQERRQMFDLLNSGDLDLIYLSPEMISASNQARSSLKR
LHRIGKLARIVVDEAHCVSSWGHDFRPDYKTLNYFKKEYPDIPVMALTATANEHVVMDIV
HNLGLNKPQCFKQSFNRTNLFYKVQVKTKTHLDEITNMINGQYRNQTGIIYCHSKNSCEQ
TSARLIQNGIKCSFYHAGMTTEDRFAVQSAWQSDKIRVICATIAFGMGIDKPDVRFVIHL
TVPRTLEGYYQETGRAGRDGNHSDCIMFYSYRDVRTLQTMIQKDVDLTRENKENHLNKLR
KVIQYCENGTDCRRQQVLQYFNENFDKKDCQKQCDNCVKGNDSTTEERDVTNFARDMVNL
VKSLQDEKITLLYCQDLFRGSKSNKVMSSGHDSNPYYGKGRNINKGDVERIFFHLIYEQI
LMEYSVMNGAGFACNYIKLGKHANSVLCGTRKIVVAFSTAIDRTKAPNKPTSKPASKAKL
TRVQPAVSNELANFRYNGSESSFLSASSILKNQQSTSPIVLPKRAFSIREEEAHVEYCYR
ELNDIRSRRLHEIGWKSSATLVSDESLRDMAFKLPQNEQEFQSLAGMNPHQLQYFKLFRT
KLKALMNIRQAGYKDYQLEILTGNAEQDQNQHNSPYFAPRAPTERDKQILTQLSSVFDAS
QASSTKPMPASTSQQRTSGNHHNGRKKPFRRRKKSSSIKVMK
NT seq 3909 nt   +upstreamnt  +downstreamnt
atggccttcaccacaaacatccgagagcatttggggtggttggagaagaccaaggagaac
attccgcctaagaatgtcttggaaagactgcagaatgtggcaaaggagagtggttcaacc
atacgattaacagcacctttagctgcctctccttctcttaacaaaaattcagctccgtta
caaccacaaacacagacacagagtaatggagccactggcccagtagaaaattctctttct
gctttacacactgtggactcgactcgtcgggtatctactttgaaaagctacaagccacag
atggcccccataactagaaactctgctcagcaattaccacaggccatagatcttacagat
gatgtatcggatgaggagcacctagtgccttctaaggaaaatcttacacagaaaagaacc
aaaagagccgaacagtcaaaatcggacgccccagctaagcgagcgaaggttactaaatct
ccattcgtagagccaaccacaaccaaatctaacccgtcattgaacaaattgaaaaaacag
gaattagtggacatattagctaatcaagagacacttatggaaatgttccaaagcaaaata
cagatacttgaggaaagagatgcgataacgaatagcagaaaactctcggaagaagacaaa
tgctctaaaagagcagagttgcaacttgagatcgatagattggacttacagataacgaac
ctaatgacaacaatttccaacttgaagggcaaaaaacacaacacgacggagaaaactaca
gaacaggaaggaaacaatgacagtaatgcaccagaaatagataaccaccccgttaatcct
gaaagtccattgtctcccactcaaccacaacctcacaatccttttagagaaccatatcca
gactccttactggatgactttagcgatgcagacattgatctcacgtttggtgattcaatt
gcagatgtcaccaacgagcttgaacacaacgacgactcttcaagaatacagacacaggaa
cacgaaatactgcccatggacgaggaggaacaaatgcttctccagaattttgtagtgcat
gaagatggacgatctaacaaagggagtgtgttcgaagacgaaatgagtgaagatgcagac
tatgtggagtatacaaaatccgttgatggggatttcactgagcatcaaataccacgcgtt
tctaaggaagagctggaaaacctcaaagactcggtagacgaggaggtggatataattgac
gatagtgctcctcaaaatgattatgacgttctcaaaggagtagagttttccgatgatgag
gagatcgaaagtgatagcagcattgaagtgatagatgttgtccagtataatgaagaaagg
gaaatcaacactcaaaatatcaaaaaggaacttcaaactgaagaactttttgatttaaat
agcgatgacgaacatgagctagtaaatctgtcaggtgggaagactgattctactgtcgga
ctctcgtctcataatgaggagttacctcaatttgaagatagtcacaggagatttagtaca
gaaactcataagtatccttggacagatgaagtcttttacattcttagggagactttcaaa
ttagaatctttcagatctaaccagttggaagctgtcaacgccacattgtcaggagaagat
gtgtttgttttgatgccaacaggaggaggaaaatctttatgctatcaactgccggcttta
gtccaatcaggaagcactcgaggaacaactgttgttgtttctccattgatatctttgatg
caagatcaagtagaacatttgatagctaacaagatcaaggcaggaatgatcaattccaaa
ggtactgtgcaagagcgtcgacagatgtttgacctgctgaacagcggagatctggatttg
atctacttgtctccggaaatgatcagtgccagcaatcaagctagaagctctttgaagcgg
cttcatagaattggcaagttagcaagaattgttgtagatgaagcccactgtgtttcgtct
tggggccacgacttccgcccagattacaaaacattgaactacttcaagaaagagtatccg
gatatacctgttatggcgctgacagccaccgctaacgagcacgttgttatggacattgtt
cacaatctaggtctgaataagccacaatgtttcaaacaaagtttcaaccggacaaatctt
ttttacaaagttcaggtgaaaacgaaaactcatctagatgagattactaatatgatcaat
gggcaatatcgtaatcaaactggtatcatttactgtcactctaagaactcatgtgaacaa
actagtgcccgtctgattcagaatggtatcaaatgttctttctatcatgctggaatgacg
actgaagatcgctttgcagtacaatctgcttggcaatccgacaaaattagagtgatttgt
gcaactatcgcttttggaatgggtattgacaagccagatgtccgattcgttattcattta
accgttcctagaacgcttgagggatattatcaggaaacagggcgagctggaagagacgga
aatcattctgattgcatcatgttttacagttacagagatgtgaggactttacagacgatg
attcaaaaagacgttgatttgaccagggaaaataaagaaaatcacctaaataaattgcgt
aaggtgattcaatactgcgagaatggcacagattgcagaaggcagcaagtactgcaatac
tttaacgagaactttgataagaaggattgtcaaaagcaatgtgacaattgcgttaaaggg
aacgattcgactaccgaagaaagagatgtaaccaactttgctcgtgacatggttaacctt
gtgaagagtttacaagatgaaaaaatcacgctgctgtattgtcaagatctatttagaggg
tcgaaaagcaacaaggtgatgtcttcgggccatgatagtaatccctactatggtaaaggt
agaaacataaacaaaggagacgttgaaagaattttctttcatcttatatatgagcagatt
ctcatggagtactcagtgatgaatggtgcagggtttgcctgcaattatattaaacttggg
aaacatgccaattcggtattgtgtggaaccagaaagattgtagtggcattttcaacagcc
attgatcgtaccaaggctcccaacaagcccacgtcaaagccggcatccaaggctaagctg
acaagagttcaacctgctgtttccaacgaactggccaactttaggtataatggaagcgaa
agttcttttctttccgcttcttctatcttgaagaatcaacaatccacttcgcctattgtc
ttgccaaagagggcattctccattagagaagaagaagcccatgttgaatactgttacaga
gagttgaatgacatccgcagtcgtcgtctacatgagattggatggaaatcctctgcgaca
ttagtcagtgacgaaagcctaagggatatggcattcaaactgccccaaaatgagcaggaa
tttcaatcattggcaggtatgaaccctcatcaattacaatatttcaagctattcagaacc
aaattgaaggcattaatgaatatacggcaagccggatataaggactatcaattagaaatc
ctcacaggcaatgctgaacaagatcaaaaccagcataattcaccatattttgcccccagg
gctcctactgaaagagataagcagatcctaactcaactaagcagtgtattcgatgcatct
caagcttccagcactaaacccatgccagcttccacatcccaacaacgcaccagtgggaat
catcacaatggcaggaaaaaacccttcaggcgacgcaaaaagagctcttccatcaaggtt
atgaagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (54)   

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