KEGG   Komagataella phaffii: PAS_chr1-1_0143
Entry
PAS_chr1-1_0143   CDS       T01092                                 
Name
(RefSeq) Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease comple
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
ppa  Komagataella phaffii
Pathway
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr1-1_0143
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr1-1_0143
Enzymes [BR:ppa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     PAS_chr1-1_0143
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PAS_chr1-1_0143
  mRNA degradation factors
   3'-5' decay
    Pan complex
     PAS_chr1-1_0143
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH
Other DBs
NCBI-GeneID: 8197266
NCBI-ProteinID: XP_002489788
UniProt: C4QW84
Position
1:complement(827139..830495)
AA seq 1118 aa
MEGWNEINRVPCMRPSFRISDPTRQSVPSALLFDDSHDLTWIGSEDGFVKSLADQMLTPY
TSFRCHSSKVLQLLNNKRGILSLSENSIKLTSRTGLCRMNLHDISVNHSRSMAYTSNTEN
EVLLGGFQGKLVKLNLMRGEISDTIPYDAPVYTMSANLSQICLGRVDGTVDILDPRSNDI
IASFSGHMRTLSSMDCRGNTLITTGYSVRNGTFYADPIANLYDLRTKSLMPPVTFPAGAS
FVKLHPKLPNVAILASSAGLIHFVNLYSPMNVSLYQADVGSYMNNFEVSPSGDFMGFTDS
FQNVHLWSNAPDLSSAHIPNLASSLEQATMLPPPANSDIIPADSDSTVPLSSIGMPYYDQ
PLLSNWPFDMKFSLGHVPKKINPELINSSKSVVENYNAHAFGQNNLPSGMGVNMNIPGVF
KTDTDTRIAVYSREKYGPRNVAQPYYRLHDRSNQKNKFVPKFISERLDVDEKSSSTAENT
NSDFKDTLYEQLFDCKPHSSQEVPYCFTKLDIHYSKFGVHDFDFEFFNKTNLSGLESHVQ
SAYCNSLLQLYRFAPLMFNYAVGSLAEESVDNNSLLTELGFLFDMMVKASGQHIAPSNFQ
KMLSKIPEASRILDIYNNGYNRDEHSQRVLIQSFNNFLLERISLDEMNQAKSNAPHIFNT
IMGIPVECEFIGVGCGLRKIGNTTLYSLDVRHPKTNNVVLNKKLNHSIIPYIELALSRNL
SVNMACDNCNETHAFDTLYTVKDLPPILSLNLELTNQELSELKASKTNWLASEFYASMNK
GRICLKSITTGFRHLKYELLGYVAQVTDKEGNSNLVTFVKVGKDEWFLFNDFLVMPISEH
EVLNLNYWWKKPVIVIYKNSESTNMFDYEGWRQNLNQDILYRDHFSRGTREGKIIEYELL
TKEEAPQPGTLVAIDAEFVVIEPELVEFNSDGTKKVIRPLKNSLARVSVLRGDTGPKEGI
PFIDDYVIIEEPINDYLTSWSGIEPDDLNLEKSKRSLTTLQAVYRKLWLLLNLGCIFVGH
GLINDFRTINLSVPKQQVRDTAELYFLKKEKRKLSLKFLTYAVLRREVQKGNHDSIEDAK
AALMLYRKYIQLNNTGELQHTLEEVYMEGQMLSFKVPT
NT seq 3357 nt   +upstreamnt  +downstreamnt
atggaaggatggaacgaaatcaatcgagttccatgcatgaggccttcttttaggatttct
gatccaacccggcaaagtgtcccttctgctttactttttgacgactcccatgacctgacc
tggattggttcagaagatggctttgtcaagtcgctggccgaccaaatgctcacgccctat
acatcatttcggtgccatagctctaaagtgctccaattgcttaataacaaaagaggaatt
ttatctctgagtgaaaattcaatcaaattgacctcgaggactggactgtgccggatgaac
ctgcacgacatctctgtgaatcattcacgttcaatggcctacacgtccaatacagaaaac
gaagttctcttgggaggatttcaaggaaagttggtgaaattgaatttgatgagaggtgag
atctcagacacgattccttatgatgcacctgtttacacaatgagtgccaacctgagtcaa
atttgtttaggtagggttgatggtaccgtggatatcttagaccctaggtccaatgatatt
atagcgagtttttctggccatatgaggacgctatccagcatggactgtagaggtaacact
ctgataacaacaggatattcagtgagaaacggtacgttctatgcagaccctatagccaat
ttgtacgacttgagaactaaaagtttgatgcccccggtgaccttcccggcaggtgcttca
tttgtcaagttacatcctaaacttccaaatgtcgccattttagcatcttcagctggctta
attcatttcgtgaatttgtattcccctatgaatgtatccctttatcaggccgatgtggga
tcttatatgaataattttgaagtatcaccctctggtgattttatgggtttcactgatagt
tttcaaaatgtacatctatggtccaatgcgccggatttatcatctgcccacataccgaac
ctcgcatcgtcattggaacaggctaccatgttaccaccacctgcaaattcggatatcatt
ccagcagattcagacagtacagttcccctgagctctattgggatgccttactatgaccag
ccgttactttcgaattggccttttgatatgaagttctctctgggacacgttcctaagaag
attaatcccgagctcatcaatagttcaaagagcgtcgttgaaaactacaatgcccatgct
ttcggccaaaacaatttaccatcaggaatgggcgtaaacatgaatatacctggtgttttc
aaaaccgatacagatacaaggattgctgtgtacagcagagagaagtatggacccaggaat
gtggcccaaccttattacaggctacatgatagaagcaatcagaaaaacaaatttgttccc
aagttcatcagtgaaagattggatgtggacgagaaaagtagcagcacggccgagaataca
aactctgatttcaaagatacattgtatgagcagctgtttgactgcaagccccattcctct
caagaagtgccatattgctttaccaaactggacattcattacagtaagtttggggtacat
gactttgattttgagtttttcaacaaaaccaacctatccggattggagtctcatgttcaa
agtgcctattgcaacagtctcttacaactttaccgatttgcaccacttatgttcaactac
gctgtaggatctttggcggaagagagtgttgataacaattccctcttaacagaactagga
tttttgtttgacatgatggtaaaagcaagcgggcaacatattgccccttctaacttccaa
aagatgctgagcaaaataccagaagctagtcggattcttgacatatataacaacggctac
aatagagatgagcacagccaaagagtgctaatacaatctttcaataattttttgttggaa
aggatttctttggatgaaatgaaccaagcaaaaagcaatgctcctcacatattcaatacc
attatgggaataccagtggagtgtgagtttattggcgttgggtgtggtttgagaaagatt
ggaaatacaactctctattctctggacgttagacatccaaagactaataatgttgttctc
aataagaaactaaatcacagtattattccctatattgagttggctctcagcagaaacttg
tctgtcaacatggcatgtgataactgtaatgagacccatgcttttgacacattgtacaca
gtgaaagatttgcctccaattttatcgttgaacttggaactcactaaccaagaactttcg
gaattgaaggcttctaaaacaaattggcttgcatcagagttctatgccagcatgaataag
ggaaggatatgcttgaaaagtataacaactgggttccgccatttgaaatatgaattgttg
ggatacgttgcgcaagtgaccgataaagaaggaaactctaaccttgtaacattcgtgaag
gtaggcaaagacgagtggtttttgttcaacgactttttggtgatgccaatttctgagcat
gaagtgttgaatttaaattattggtggaagaagcctgtcattgttatttacaagaactct
gaaagcaccaacatgtttgactatgagggctggaggcagaatttgaatcaggatattctg
tacagagatcatttcagccgtggaactagagaaggaaaaattattgagtacgaactattg
accaaagaagaggccccacaaccaggaacacttgttgctatagatgcagagtttgtcgtg
atagagccagaactggttgagtttaatagtgatggtaccaagaaagtgattcgaccactg
aagaattctcttgcaagagtttctgtattgaggggggatactggacccaaagagggaatc
ccatttattgacgattatgtcattatcgaagagcctataaacgattacctgacatcatgg
tcgggcattgaacccgatgatttgaaccttgaaaaatcgaagagaagtttaacgacgttg
caagcagtctatagaaaattgtggttgttattgaacttggggtgcatctttgtcggacat
ggtctgatcaatgattttagaaccattaatttgagtgtccccaaacaacaagtaagagac
actgccgagttgtactttttgaagaaggaaaaaaggaaattatcgttgaaatttttaaca
tatgccgtcctgagacgggaagttcaaaaaggaaaccatgattcaattgaagatgccaag
gcagcattgatgctttacagaaagtatatacagttgaataatactggagagctccaacac
actctcgaggaagtgtacatggagggacagatgttgagtttcaaagttccgacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (41)   

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