KEGG   Komagataella phaffii: PAS_chr2-1_0619
Entry
PAS_chr2-1_0619   CDS       T01092                                 
Name
(RefSeq) Subunit of heteropentameric Replication factor C (RF-C)
  KO
K10755  replication factor C subunit 2/4
Organism
ppa  Komagataella phaffii
Pathway
ppa03030  DNA replication
ppa03410  Base excision repair
ppa03420  Nucleotide excision repair
ppa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PAS_chr2-1_0619
   03410 Base excision repair
    PAS_chr2-1_0619
   03420 Nucleotide excision repair
    PAS_chr2-1_0619
   03430 Mismatch repair
    PAS_chr2-1_0619
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppa03032]
    PAS_chr2-1_0619
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr2-1_0619
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr2-1_0619
DNA replication proteins [BR:ppa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    PAS_chr2-1_0619
  DNA Replication Termination Factors
   ELG1-RFC complex
    PAS_chr2-1_0619
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    PAS_chr2-1_0619
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     PAS_chr2-1_0619
  Check point factors
   HRAD17(Rad24)-RFC complex
    PAS_chr2-1_0619
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 Rad17 RuvB_N AAA_22 AAA_11 AAA_assoc_2 AAA_19 ResIII AAA_16 AAA_14 Mg_chelatase AAA_7 AAA_24 DUF815 AAA_23 AAA_5 bpMoxR AAA_2 Parvo_NS1 AAA_28 SLFN-g3_helicase RNA_helicase TniB AAA_30
Other DBs
NCBI-GeneID: 8199233
NCBI-ProteinID: XP_002491539
UniProt: C4R185
Position
2:complement(1162332..1163306)
AA seq 324 aa
MSTPWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMAREL
FGPQLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEA
DSMTFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLK
MISQSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFGEDSIENIAGLIPQNLVQSL
IETLQSKNLNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQKIEVSRILYETD
SKLSSGSDEFIQMLNLFLQLSKIF
NT seq 975 nt   +upstreamnt  +downstreamnt
atgtccactccctgggtcgaaaaataccgacccaaaaagctggatgaggtctctgctcag
tccaacgtcatcagagtcctgtctaatcaactcaaatctgcgaatatgcctcatttactc
ttctatggaccaccaggaacgggtaaaacgtccacaattttggccatggcacgggagctt
ttcggcccccagttgatgaaatcaagggtactagaactaaacgcatccgatgaaagggga
atatcaattgtgagggacaaggtcaagaactttgctagattaagcgtcacaaatcccacc
cccgaggataaagagaattacccatgtcccccatacaaactgattattctagatgaagca
gactccatgacttttgatgcccaaagcgcgctgcgacgaataatggagaactattcacac
attactagattttgcattatctgtaactatatcacaagaattatagacccaataacttcc
agatgttccaagttcagatttagtcctttgaacagtgcaaattcgttggcaactttgaaa
atgataagtcaatcagaggagctcgacatcgatgacgatagtctaacccaaattctagac
atttccaacggagatttaaggaaatctataaactttcttcagactggtcataagctgttt
ggagaagatagcatagagaatattgcaggtctgattcctcagaatttggtacaatccctg
atagagactcttcaatcaaaaaatttaaacaagatctacgaatttctgtacatgctggtc
ttgaagagctacaatagtgcaactatcttgacctcattgcattcatgtcttctcttaaag
aatatttatctcaactcagagcaaaaaattgaggtgtcaagaattctatatgagactgac
tctaagctgtcgagcggttcagatgagttcatacagatgctaaatcttttcttacagctc
tcaaaaattttctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (26)   
   Pfam (26)   
All databases (60)   

Download RDF
DBGET integrated database retrieval system