KEGG   Komagataella phaffii: PAS_chr2-1_0709
Entry
PAS_chr2-1_0709   CDS       T01092                                 
Name
(RefSeq) Putative RNA helicase
  KO
K12599  antiviral helicase SKI2 [EC:3.6.4.13]
Organism
ppa  Komagataella phaffii
Pathway
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr2-1_0709
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr2-1_0709
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     PAS_chr2-1_0709
  mRNA degradation factors
   3'-5' decay
    Ski complex
     PAS_chr2-1_0709
SSDB
Motif
Pfam: DSHCT Ski2_N DEAD Ski2_beta-barrel MTR4-like_stalk Helicase_C ResIII MTR4_beta-barrel
Other DBs
NCBI-GeneID: 8198327
NCBI-ProteinID: XP_002491637
UniProt: C4R1I3
Position
2:complement(1346342..1350043)
AA seq 1233 aa
MREIDDILQEIHDLSLNKVDLPPDTQTKFQFPSVTEEEEINDLKKQYLTPSDQIPPDLLK
EFLIIPDESDQKLKFYQALVKIPPFMDRTKIKFKRKGIEGKIVGYEEALDLSGDNLTSSN
SFSLHRKPAENGSSIRGQTTNLPFLPGGLVSKAVKDTESINNLLHRDDQGLFDIPLGFER
GLQLEKAGDTELVDELSKLPESNEETLENQIPSGDVELLDPETLEEDAIQEGDEIDALLP
SDISFSKRPKTERPQAARQWAHLVDLDHKLENFHELVPNMARTWPFELDTFQQEAIYHLE
KGDSVFVAAHTSAGKTVVAEYVIAMANINMTKAIYTSPIKALSNQKFRDFKHDFEDIDVG
LITGDVQINQEANCLIMTTEILRSMLYRGADVIRDVEFVIFDEVHYVNDIDRGVVWEEVI
IMLPEHVKIVMLSATVPNTMEFASWVGRTKQKDVYVISTPKRPIPLEIFVWAKSDLFKVV
DSNRNFLEKNFQAHSDVLVKPKKEVTGSQAGNRGGRGNARGASRGGRGSSSTVSSRGRGG
SANVGTRFTKRDGPNKKTWTNLVQYLRSHDLLPSVIFVFSKARCEEYADSLQGVNFCTGS
ERSRIHMFIDKAVSRLKKEDRELPQIMKMREMLSRGIAVHHGGLLPIMKEVIEILFAKTL
IKVLFATETFAMGLNLPTRTVVFSELRKHDGTGFRNLLPGEFTQMSGRAGRRGLDTTGTV
IVMSYNEPLESKPFQQITLGVPTKLVSQFRLTYNMILNLLRIEALRVEEMIKRSFSENTT
QSGLKENEKEIIELQKKIAEISQAGCQECDPAKLKEFSTAICDYTKLTGELIRLSLEIPL
HRKRFRRGMLFIYTDADGFPAPAFLYDIKMSDSLFVALVFDIERCEENNTGLPYIPESPS
FIKNTIPKWKFKGNFRFTTIPFNKVQYVTRFVLQVLLKSIIRMEPESIEKAEEQILQLLH
FYKKFEEYNWSASLTIPQNDLYKKIQDYRKIIANAPVIQCPSLREHYIQIKDLDSLRSRL
ITLKSLVSDDNMTLLPDYEQRLKVLNELEFVDDHLNVVLKGRIACEINSGWELALTELLL
DNFLADFDPEEIVALLSAFVYEGRTRDDEEPALTPRLEKGKAKIRDIVSHLLEIFQDKQV
SLSAEEESFLEAKRFNLVNVVYEWAKGTSFSDIMKLSSEAEGTIVRVITRLDEVCREVKS
AALIIGDSALHDKMSEAQEKIKRDIVFCASLYL
NT seq 3702 nt   +upstreamnt  +downstreamnt
atgagggaaatagatgatatactacaggagatacatgatctatctttgaataaggttgat
cttcctcctgatactcaaacaaagtttcagtttccgtcagttacggaagaagaggaaatt
aacgatcttaaaaaacagtacttaactccatctgaccagattcctccggatttgttgaag
gaattcctaataataccagatgaatcagatcagaagctcaagttttatcaggcactggta
aagataccaccgtttatggatagaaccaaaataaaattcaagagaaagggtatcgaggga
aaaattgttggatatgaagaggccttagatctttcaggagataacctaactagtagtaac
tctttcagtcttcatagaaagccagcggaaaatggatcttcgatacgaggacaaactact
aatttgcctttcctgcctggtggcttagttagcaaagcagtgaaagacacagagtctatc
aacaacctattgcatagagatgatcagggccttttcgatatccccttgggatttgagaga
ggtctccaattagagaaggcgggtgatacagaattggttgatgagttatctaagttacca
gagtctaatgaggaaactttggagaatcaaataccatccggcgatgtcgaattactagac
cccgagacacttgaggaagatgccatccaagaaggtgatgaaatcgatgccttattacct
tctgatattagctttagcaagaggccgaaaacagaacggccgcaagccgctcggcaatgg
gcccaccttgtggatttggatcacaaattagaaaatttccacgagctggtaccaaacatg
gcacggacttggccatttgaacttgacacatttcaacaagaagcaatctatcatcttgag
aaaggtgattcagttttcgttgctgcgcacacatctgctgggaaaacagttgttgcagaa
tatgtgattgccatggccaatataaatatgacaaaggcaatttatacttcgcctatcaaa
gctctgagcaatcaaaaatttcgtgatttcaagcatgattttgaagatattgatgtcggt
ttgattactggtgacgttcagatcaaccaagaagcaaactgcttgattatgacaactgaa
atattaaggtccatgttgtacagaggagcagacgtgatccgtgatgtggaatttgtcatt
tttgatgaggttcattatgttaatgacattgacagaggggtggtttgggaagaagttatt
attatgctgccagaacatgtcaaaattgtcatgctctctgctactgtgcctaacaccatg
gagtttgcctcatgggttggaagaactaagcagaaagatgtttacgttataagcactcca
aaaagacctattcctttggaaatttttgtgtgggcaaaaagcgatctttttaaagttgtt
gattctaacaggaactttttggagaagaactttcaagcccatagtgacgttttagtgaag
cctaaaaaggaggtcacaggttcccaggccggtaaccgagggggccgtggaaatgctaga
ggtgcttctagaggcggtagagggtctagttctactgtttcctctcgtggaagaggaggt
agtgccaatgtgggtaccagatttacaaaaagagatggcccaaacaaaaagacttggact
aatcttgttcagtatttaagatcccatgatcttcttccttcggtaatctttgtgttttcc
aaagctagatgtgaagagtacgctgatagtcttcaaggtgtcaatttctgtactggttcc
gaaagatcccgtattcatatgttcattgacaaagcagtatctcgacttaaaaaagaagac
agagagcttcctcaaattatgaagatgcgtgaaatgttaagtagaggtattgctgtccat
cacggtggattattgccaataatgaaggaagtgattgaaattttatttgcaaaaacttta
atcaaagtgctatttgccactgaaacttttgcaatggggttaaatcttccaactagaaca
gtggttttctcagaactacggaagcatgacggaacggggttcagaaatttacttcccggc
gagtttacgcaaatgtcaggaagagccggacgacgtggtctggatactactggaactgtc
attgttatgtcttataatgaacccttggagtccaaaccattccagcaaattacccttggt
gttcctacaaaacttgtgtctcaattcaggttgacatataacatgattttaaatcttcta
agaattgaagctttgagggtggaagaaatgatcaaacgttcattcagtgaaaatactacc
caaagcggcttgaaagagaatgagaaagaaattatagaactgcagaagaagatagcagag
atcagccaagcgggatgtcaagaatgcgatccagccaaattaaaagaattttcgactgca
atatgtgattacacgaaactgactggtgagttaattcgactttctttggaaattccactt
caccgtaagaggttcagaagaggcatgctctttatttatacggatgctgatggttttccg
gctcctgcctttttgtatgacatcaagatgtcagactctctgttcgtggctcttgtcttt
gacatagaaagatgtgaggagaacaacactggacttccatatatccccgagtcaccatct
tttatcaagaacacgattccgaaatggaaattcaaaggtaatttcagatttacaacaatt
cccttcaacaaagttcagtacgtaacaaggtttgtcctgcaagttttgttgaaatcaatc
attcgaatggagcctgaatcaatagagaaagctgaagagcaaatactccaactgcttcat
ttttacaagaagtttgaagagtacaattggtctgcatctctcaccattcctcaaaatgat
ctctataaaaagatacaagactatagaaagatcattgccaatgcgccagtcattcagtgc
ccttcgttgagagaacactatattcaaatcaaagacttagatagcttgagatcgaggttg
ataactttgaagtcccttgtttcagacgacaacatgaccttactaccagattacgaacaa
agattaaaagtactaaacgaacttgaatttgtcgatgatcacttgaatgttgtactgaag
ggaaggattgcctgtgaaattaactcaggatgggagctggctctgaccgaactactgctg
gataatttcctggctgattttgacccagaagagattgtagctttacttagtgcgtttgtt
tatgaaggtagaactcgggatgatgaagagccagcattaactccccgacttgaaaaggga
aaagcaaaaattagagacatcgtgagccatcttttagagatatttcaagacaagcaagtc
tccttgagtgctgaagaagagtcatttttggaagcaaaacgtttcaatctggttaacgtc
gtctacgaatgggcaaaaggaacttctttcagtgacattatgaaactctcatctgaagct
gagggcacaattgttagagttattaccagattagatgaagtttgcagagaggtgaaatct
gctgcattaattattggtgattcagcattgcatgataaaatgtctgaggcccaagaaaag
ataaaaagggacattgtattttgtgcttccctttatctctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (44)   

Download RDF
DBGET integrated database retrieval system