KEGG   Komagataella phaffii: PAS_chr3_0432
Entry
PAS_chr3_0432     CDS       T01092                                 
Name
(RefSeq) Evolutionarily-conserved 5'-3' exonuclease component of cytoplasmic processing (P) bodies
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ppa  Komagataella phaffii
Pathway
ppa03008  Ribosome biogenesis in eukaryotes
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PAS_chr3_0432
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr3_0432
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr3_0432
   03009 Ribosome biogenesis [BR:ppa03009]
    PAS_chr3_0432
   03016 Transfer RNA biogenesis [BR:ppa03016]
    PAS_chr3_0432
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr3_0432
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PAS_chr3_0432
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     PAS_chr3_0432
Ribosome biogenesis [BR:ppa03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PAS_chr3_0432
Transfer RNA biogenesis [BR:ppa03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    PAS_chr3_0432
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    PAS_chr3_0432
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 MRP-L46
Other DBs
NCBI-GeneID: 8199563
NCBI-ProteinID: XP_002492661
UniProt: C4R4J6
Position
3:839909..844264
AA seq 1451 aa
MGIPKFFRYISERWPMISEPIEDSQIAEFDNLYLDMNSILHNCTHSNDGSVDLMKEEEMF
SAIFAYIEHLFTLIKPGKTFFMAIDGVAPRAKMNQQRSRRFRTAIEAEKSVEIAQKNGLI
TSKDENFDSNCITPGTEFMAKVTTNLKFFIHQKISSDAKWQKVQVILSGHEVPGEGEHKI
MDYIRFLKAQEGYDPNTRHCIYGLDADLIMLGLVIHDPHFAILREEVVFGRGSKASSTDV
SEQQFYLLHLSLLREYLALEFKDLEDQIKFDYDLERILDDFIFIMYVIGNDFLPNLPDLH
INKGAFPRLLATIKETMIDSDGYLQEGGVINMERFGLWLDHLSQFELQNFEQVDVDVEWF
NKQLENISLDGERKRERAGRKLLLRRQQELISKLRPWILEFYSSRDNIYSAHDDDSLIPT
LQLDTELMEEEIKLPFIKQFALDVGFFIVHSKSQNTYHAKIDIDGINVNESDEEFEARVL
YIRKKIKEYENSIFVEDENTLEEQKNIYDTKFVNWKNKYYKEKFGFTLSDTEDILKLTES
YIQGLQWVLFYYYRGVPSWQWYYPYYYAPRISDIKLGIKACLEFDKGTPFKPFEQLMAVL
PARSKQLVPACYRPLMTDPNSPIIEFYPDEVEIDKNGKTASWEAVVKINFVDEKRLLEAL
EPYNSKLNAEERQRNSLGTNIEFSYHPQVNQVHSSPIPTIFPDITEDHCYEIVVEFDKLH
SSTYAKPMKGAKQGINLLAGFPTLKTIPFTSQLMLAECHIFNQPTKSESMILSTQNPFEG
LTVEQFAAQNLGQTIYVNWPYLKEAKVVAVSDGLNVFEPGNKSIRTTRMESSEVSEFASD
VRYISETLFKRKGVLLVNYTEEELQGTPEPRRSPHNDDAIQGIVFVKKVNGVIRTRSGAY
VKTYSDKIEKYPINLLVDDVVNKDRRLLEKPPVPLEEEFPKGTTLISLGAFAYGTPATVV
DHQNDLMTVRFVNQPIKHEFNYGEIQAQREAHTNVYYPSFKVAKIVGITALALSRITSSY
RIVNGAKKTVNIGLDLKFEGRKLKVLGYTKRNEKHWSYSALAVNLLQQYQKRFPSVFKII
SLRNDSSIPEAKELFPQVPASQVDEKVNELVAWVKEQKKSFVVATLESESLTKVSIGKIE
QEVIKFVSKPHEHIPQKGLKGVPREATLDISNSSQFLSKQTFNLGDRVIYVEDSGKVPNF
SKGTVIGVRSVGTKVTLNVLFDLPLLSGNTFDGRLATPRGVTVDSSLVLNLTKRQLIYHD
RKPAKKEGKPGVKKTSQDSKKQTVKLQNGSGKAKQAQDAELSVTTTPVPVPAANTAPVTA
SVQATSVVTATVPTSKPSNNSEDEHELLRLLKGNKDSSESQGSQEPLARTSIQQIYGTVF
NQVLSAQPQLQPVRGFSNPVPETPVNGVQANEQHSDSTPQNHSRDENQGRGRGRGRGNRR
GRGRGRGKGGQ
NT seq 4356 nt   +upstreamnt  +downstreamnt
atgggtattccaaagttttttcggtacatctctgagagatggccgatgatatctgagcca
atagaagacagccaaattgccgagtttgataacctgtatctggacatgaactcaattctt
cataattgtacacatagtaacgatggatcagttgatttaatgaaagaagaagagatgttc
agtgctatttttgcttacattgaacatcttttcactttgatcaaacctggaaagacgttt
ttcatggccattgatggtgttgctcctagagcaaagatgaaccagcaacgatctagaaga
ttcaggacggccattgaggcagaaaaaagtgtagagatagcccaaaagaatggactcatt
actagcaaagacgagaattttgacagtaactgtatcactcctggaacggagtttatggcc
aaggttaccactaacttgaagtttttcatccaccagaaaatctcttcagatgcaaaatgg
cagaaagtccaggttattctcagtggacatgaagtccccggagaaggagagcacaaaatt
atggactatattcgttttttgaaggctcaagaggggtatgatccgaatacgagacattgt
atttacgggctggatgcagacttgatcatgttgggattggtcattcacgatcctcatttt
gccatcttgagagaagaggttgtgttcggaagaggatccaaggcctcgtcaacagatgtg
tcagaacagcaattctaccttctacatctctccttgttacgtgaataccttgctcttgag
ttcaaagatttagaagaccagataaagtttgattatgacttagagagaatcttggacgat
tttatttttatcatgtatgttattggaaatgatttcttacccaacttacctgacttgcat
atcaacaaaggtgccttccccagactcttagcaacgatcaaagaaaccatgatagattcg
gatggatatctccaagaaggaggtgtcatcaatatggaacgattcggtctgtggcttgac
cacttgtcacaatttgagcttcaaaattttgagcaggtcgacgtggatgtagaatggttt
aacaagcagctagagaacatatccctagatggtgagcgaaagagggaaagagctggaaga
aagttgttgcttagacgtcaacaggaattaatttcaaaacttagaccatggattctcgag
ttttattcatcaagagacaatatatattctgctcatgatgatgactccttaattccaact
ttgcaattggacaccgaattgatggaagaagaaatcaagttacccttcataaagcagttt
gcacttgatgttggtttctttattgtgcacagcaaatctcagaatacgtaccatgctaag
atagacattgatggtataaatgtcaatgaatctgatgaagaatttgaagctcgtgtcttg
tatatcaggaagaagatcaaagaatatgaaaactcaatttttgttgaagatgaaaacact
ttagaggaacaaaagaacatttatgataccaagttcgtcaactggaaaaacaaatattac
aaagaaaagtttggatttactctttctgacacagaggacattttgaagttgacggagtcg
tatattcagggtcttcaatgggttttgttctactattatcgaggagttccttcttggcaa
tggtactatccttattactatgctcctagaatctctgacatcaaattagggattaaggct
tgcctggagtttgacaaaggtacaccgttcaagccatttgaacaattaatggctgtcctt
cctgcaagatcaaaacagttagttcctgcttgttatagaccgttgatgaccgatccaaac
tctcccattattgaattttaccctgatgaggttgaaattgacaagaatggaaagactgcc
tcttgggaggctgttgttaaaatcaactttgtcgatgaaaaacgactattagaggcactg
gaaccgtataatagtaagttgaatgctgaagaacgtcaaagaaactctttgggcacgaat
atcgagtttagctatcatcctcaagtgaatcaagttcattcttccccaattccaacaata
ttcccagatatcactgaggatcactgctacgaaatagtggtcgaatttgacaagctgcac
tcttcaacttatgctaaacctatgaaaggtgccaaacaaggtataaatctattggctgga
ttcccaactttgaagaccattcccttcacttcgcagctcatgttagcggaatgccatatt
tttaaccagccaacaaaatcggaatcgatgattctaagtacacagaatccgtttgaagga
ctcactgtagagcagtttgctgctcagaatttgggccaaacaatctatgtcaactggcct
tatttgaaagaggccaaagttgttgcagtttctgacggtttgaacgtttttgagcctgga
aacaagtctatccgaacgactcgtatggaaagctctgaagtctcagaatttgccagtgac
gttcgctatatcagtgagacgctattcaagagaaaaggtgttttactggtgaactacact
gaggaagagttgcaaggaacacctgagcctcgtagatcccctcacaatgacgatgcgatc
caaggaattgtgtttgtaaagaaagtgaatggtgttattcgcactagatcgggtgcctat
gtgaagacatacagtgacaagattgagaaataccctattaatttgcttgttgacgacgtg
gttaacaaggatcgtcgattattagaaaaacctcctgtgccattagaagaagaattccca
aagggtactactctcataagtttgggagcttttgcttacggaactcctgctactgttgtt
gaccaccaaaatgacttaatgaccgtcagattcgtaaaccagccaattaagcatgaattt
aactatggtgagattcaagcacaaagggaggcacacaccaatgtgtattatccctccttt
aaagttgccaaaatcgttggaattacggcgctagccttgtccagaataacctcttcctat
agaatagttaatggagctaagaaaactgttaacatcggattagatttgaagtttgaagga
agaaagttaaaggttctgggatacactaaaagaaacgagaaacattggtcatacagcgct
ttggctgtaaacttgctgcaacaatatcagaaacgtttcccatctgtttttaagataatt
tctctccgaaatgattcttcaattcctgaagccaaagaactgtttcctcaagtccccgct
agccaagtggatgaaaaagtcaatgaacttgtggcttgggttaaagaacaaaagaaaagc
tttgttgttgcaacattggagtctgagtctttgaccaaggttagtatcggaaagattgaa
caggaagtgattaagtttgtttcaaaaccacatgaacatattccccaaaagggtttgaaa
ggagttcctcgtgaggctactctggatatcagcaactcttctcaatttctttccaagcag
acttttaatctaggagacagagtgatctacgtagaagattctggtaaggtacccaacttc
agtaaaggtacagttattggggttcgaagtgtcggtacgaaagtgactttgaacgtattg
tttgacttgccattgctctctggtaatacctttgatggaagacttgcaacccccaggggt
gtcactgttgatagttcattggtattgaacttaacaaagcgtcaattgatttaccacgat
aggaaacccgctaagaaagaaggtaagcctggagttaagaagacatctcaggactccaaa
aagcaaacagtgaagttgcagaacggttcaggtaaggccaaacaggcacaagatgctgaa
ctgtcagtcactacgacacctgttccggttcctgccgctaacactgcaccagttactgca
tctgtacaggctacctcggtggttactgctaccgttccaacttctaaaccttcaaacaac
tctgaggacgaacatgaattacttcgcttactgaaaggtaacaaggacagtagtgaatcg
caaggctctcaagagcctcttgcccggacttctatccagcaaatttacggaacggtgttc
aatcaagtgttgagcgctcaacctcagttgcagcctgtcagaggcttctcaaatccggta
cctgaaacccctgtaaatggagtccaagcgaatgaacaacactctgattctacccctcaa
aatcattctagggatgaaaaccaaggaagaggtcgtggtagaggcagaggaaatagaaga
ggaagaggtcgaggtagaggcaaaggaggacagtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (52)   

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