KEGG   Komagataella phaffii: PAS_chr3_0453
Entry
PAS_chr3_0453     CDS       T01092                                 
Name
(RefSeq) Subunit (90 kDa) of TFIID and SAGA complexes
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ppa  Komagataella phaffii
Pathway
ppa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PAS_chr3_0453
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppa03021]
    PAS_chr3_0453
   03036 Chromosome and associated proteins [BR:ppa03036]
    PAS_chr3_0453
Transcription machinery [BR:ppa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     PAS_chr3_0453
   Coactivators
    SAGA/TFTC/STAGA complex
     PAS_chr3_0453
Chromosome and associated proteins [BR:ppa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     PAS_chr3_0453
    STAGA complex
     PAS_chr3_0453
    TFTC complex
     PAS_chr3_0453
    SAGA complex
     PAS_chr3_0453
    SLIK complex
     PAS_chr3_0453
SSDB
Motif
Pfam: WD40 TFIID_NTD2 ANAPC4_WD40 NBCH_WD40 LisH Nup160 PROPPIN WD40_like eIF2A WDR54 DUF5570 MRJP
Other DBs
NCBI-GeneID: 8199581
NCBI-ProteinID: XP_002492679
UniProt: C4R4L4
Structure
Position
3:874605..876773
AA seq 722 aa
MKQEPGDSSDKSAPSGSITPQPKPPQQANVSNQQPQKPQQFSAADLNRIVLEYLNKKGYH
KTESMLRMESSHIPAPPTNIPTPQTTNISRPTAPGRAPEYSDDPATIKRGYSILKSWCES
SLDFYRPELEKFLYPVFVHCYLDLIARGYPSHAREFYDKFSKDHSVLHEYEISKLGGISL
KEHLQENDVAKIFRSHKFKVLIGRTTFNLLLYFLNENDAVGGGVVLRLINQYIEPVITTE
AIAVEREGELNLSEGIVELHTLNNTSIGGEQREISSVDAFNKKPVKLGKLQVDPEYSKEL
EAELKLKDEHEQAAQKKVSTTLLEEYRENFKVDPSDENNPSKDTLPLPLKSAQDLRNDIA
MIQDSRAKIKLSAAQASLPSVCMYTFHNTNNDLTCLKFNDDSTMVASGFQDSFIKLWSID
GSPLRSLLKNDPYNQQNNDGVAVKGSRRLVGHSGAVYGVDFSPDNRYLISCSEDKTVRLW
SLDTYTCLVSYKGHSSSVWDVKFSPMGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDV
DCVEFHPNSTYLFTGSSDKTARMWDIARGECVRVFMGHSGAINCLAVSPDGRWLASAGED
SVVCLWDISTGRRIKAMRGHGRSSIYSLAFSREGTVLVSTGADNSVRVWDVKKNTNSPSA
QPEPINDVTAQGIQKKTEDLRRRKEIVATNDHMSVYFTKKTPVYTVHFTRRNLCLAGGVF
GG
NT seq 2169 nt   +upstreamnt  +downstreamnt
atgaagcaagagcctggggattcaagtgataagtccgctccgtctgggtcaatcactcca
cagccgaagcctccgcaacaggctaatgtatcaaaccagcagccacaaaagccccagcaa
ttttctgctgcagacttgaatagaattgtgctggagtatttgaacaaaaagggttaccac
aagactgaatccatgttacgaatggagtcgtcgcacattcctgcacctccaacgaatatc
cccactcctcaaaccacaaacatcagcaggcctactgctcctggaagagcacctgaatat
agtgatgatcctgctacgatcaagcggggatactctatactaaaatcctggtgtgaatca
tccttggatttctacagaccagagttagaaaagtttttgtatccagtatttgtgcattgc
tatcttgatttgattgcaaggggatatcccagccatgccagagaattttatgacaaattt
tcgaaggatcattcagttttacacgagtacgaaatatctaaattgggaggtatttctttg
aaagagcacctgcaagagaatgatgtggccaaaattttcagaagtcataagttcaaagta
ctgattggacgaactactttcaacttgttattgtatttcctcaacgagaatgatgctgtt
ggaggaggggtagttcttcgactcataaatcagtacattgagcctgtgatcacaactgag
gctatagctgtcgaaagagaaggggaacttaatctctctgaaggtattgtggagctacac
actttgaataacacctctattggaggagaacagagagaaatcagtagtgtagatgccttc
aacaaaaaacctgtcaagttgggaaaactccaagttgatccagagtattctaaagaacta
gaagcagagctcaagcttaaggatgagcatgaacaggcggctcaaaaaaaggttagtacc
acgctgcttgaagaatacagagaaaacttcaaagttgatccaagtgatgaaaataatcct
tccaaagacactttaccactgccattaaaatcagcacaagatttacgtaatgatattgcc
atgattcaggattctagggctaagattaaactgagcgcagcgcaagcttctctcccaagt
gtgtgtatgtacacatttcacaacacaaacaatgacttgacatgtctcaagttcaatgac
gattctactatggtcgccagtggatttcaagattcattcattaaactatggagtattgat
ggatcgccgttgagatcgttgttgaaaaatgatccatacaaccaacaaaataatgacgga
gtagctgtaaagggatctaggagacttgtaggccattcgggtgctgtctatggtgttgac
ttcagtccagataacaggtatttgatttcttgttcagaagacaagactgttaggttatgg
tcgttggatacttacacctgcctcgtttcttataaggggcatagttcgtcagtgtgggac
gtcaaattctctccaatgggacactattttgctactgcctctcacgatcaaactgcacgt
ttatggagttgcgatcacatatatcctttaagaatttttgcaggacatttaaatgacgtt
gattgtgttgaatttcatccaaactcgacctatctattcacgggatcaagtgataagact
gcaagaatgtgggatatagcgcgcggagaatgtgtaagagtgttcatgggacacagtggg
gccatcaattgtctggcagtgtcacccgatggaagatggctagcatcggcaggtgaagat
agtgtagtctgcttgtgggacatttcaactggacgaaggatcaaggccatgcgaggtcat
ggacgcagttccatttattccctggctttctcccgagaaggaactgtgcttgtcagtacc
ggtgccgacaacagtgtaagagtatgggatgtgaaaaagaacaccaactctccttcagcc
cagccagagcctataaatgatgtaacggctcaaggaattcagaaaaagacagaagatcta
cgccgtcgtaaggagatagtcgccaccaatgaccatatgtctgtctatttcactaaaaaa
actccagtatatacagttcacttcaccagaagaaacctgtgtctggctggtggtgtgttt
ggaggttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (37)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (12)   
   Pfam (12)   
All databases (60)   

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