KEGG   Komagataella phaffii: PAS_chr3_0846
Entry
PAS_chr3_0846     CDS       T01092                                 
Name
(RefSeq) Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ppa  Komagataella phaffii
Pathway
ppa03008  Ribosome biogenesis in eukaryotes
ppa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PAS_chr3_0846
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAS_chr3_0846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppa03021]
    PAS_chr3_0846
   03019 Messenger RNA biogenesis [BR:ppa03019]
    PAS_chr3_0846
   03009 Ribosome biogenesis [BR:ppa03009]
    PAS_chr3_0846
   03016 Transfer RNA biogenesis [BR:ppa03016]
    PAS_chr3_0846
Transcription machinery [BR:ppa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     PAS_chr3_0846
Messenger RNA biogenesis [BR:ppa03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     PAS_chr3_0846
Ribosome biogenesis [BR:ppa03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PAS_chr3_0846
Transfer RNA biogenesis [BR:ppa03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    PAS_chr3_0846
SSDB
Motif
Pfam: XRN_M XRN_N
Other DBs
NCBI-GeneID: 8200335
NCBI-ProteinID: XP_002493076
UniProt: C4R5R1
Position
3:complement(1636515..1639499)
AA seq 994 aa
MGVPALFRWLSRKYPKIISPVIQDEDVDIDGESRPTRYEDPNPNGELDNLYLDMNGIVHP
CSHPEHKPVPETEDEMMLDVFAYTENVIMMARPRKVIYIAVDGVAPRAKMNQQRSRRFRS
AQDAKDANEKKAAELKEMEKKGEIIDDAIKNKKTWDSNAITPGTPFMHRLADSLRYWAAY
KLTTDPGWSGIEVIISDASVPGEGEHKIMSYVRSLRSSPKHDPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQDKKSYSLQDQLRMTDIERQELKDKKTPFLWLHLNILREYLQI
ELNVPGLSFPFDLEKSIDDWVFICFFCGNDFLPHLPSLDVRDNSITTLVTIWKQILPTMK
GYLTTDGYLNLPAVERLLAELAKKEDYIFRKRYEDEKRSLENQKRRKLAQEQSSARSQNA
PNISTGKDKAPLTPNQNIPLYTTSGESVGIKMTDSEMVNNSALITKANEANKSIAELLKQ
NLQNEINKKRKISNEEQEVVKESVEEVVEEEDDVLVTSDPEDSSTEILIPKNEEIRLWEP
GYRKRYYETKFHTKDPQKVKKIARNMVQKYIEGVSWVLLYYYQGCPSWNWYYPYHYAPFA
ADFVNLSELKIEFVEGTPFRPYEQLMSVLPAASSHNLPDVFRSLMSDANSEIIDFYPEEF
PLDMNGKKVIWQAIPLLPFIDENRLLKAVQSKYDQLTEDEKFRNTNRSEILVLGRSHSHY
PTLVKELYEEGKDSYEFQVDSSGVSGVAIKLQSFDRSGVLRLPVKQLEGYRHYPDISNRD
FLMVEFKQLPKSHAKSMILSGLIPHLRRLTQEDKDSILYGGTNFYGRNRFSPEENADFKQ
YIGPHGKSQYLPRQGGYKAFIQIHSDEAKGHRHGIYHGGSHTETEFRRGGGYHQHGNRGG
RGGYQGNQGYQANSGGYQNSYQGSYQGGYRGGYQGGSQGRYQAGYQSGYQGGYQGEYKNG
YQGGYQGNQGNQGYNRQTYNASKSGTLPMKRRHN
NT seq 2985 nt   +upstreamnt  +downstreamnt
atgggtgttccagcattgttcagatggttgtctagaaagtacccgaagatcatctcgcct
gtgatacaagacgaagatgtggatattgatggcgaatcccgtcccactaggtacgaggac
cccaatcccaacggagagctagacaatctctacctagatatgaatggtatcgtgcacccg
tgttcgcatccagaacacaaaccagtcccagagactgaggacgagatgatgctggatgtt
tttgcctacacagagaatgtgatcatgatggctaggccgagaaaggtgatctacatcgcc
gttgatggtgttgctcccagggccaagatgaaccagcaacgttccagaaggttcaggtct
gcacaggatgctaaagatgctaatgaaaaaaaggcggcagagctaaaggagatggaaaag
aaaggtgaaatcattgatgacgccatcaagaacaaaaagacatgggattccaacgcaatt
acaccaggtacaccctttatgcatcgattggccgactctttacgctactgggcggcctat
aagctgactactgatccagggtggagtggaattgaggtcatcattagcgatgcctctgta
cccggtgagggtgaacacaagattatgtcctatgtaagatcactacgctcttctcccaaa
cacgatccaaataccacccactgtatctatggattggacgcagacttgattttcctgggc
ttggctactcatgaaccccattttaagattttgagagaggacgtgtttgctcaagacaaa
aagagttactcccttcaagatcagctacgtatgactgacattgagagacaagaacttaaa
gataagaaaacacctttcttatggttacatctgaatattttgagagaatacctgcaaatt
gagttgaatgtgccgggactttcgtttccttttgacttggaaaaatctatagatgattgg
gtgtttatctgtttcttttgtggtaacgattttttgccgcatttaccatcgttggatgtt
agagacaacagtattaccacattggtaacaatctggaagcaaattttgccaactatgaaa
ggatacttgaccacagatgggtatttaaacttgcccgctgtggagagactgttggcagaa
ctggcaaagaaggaggattatattttcagaaaaaggtatgaggacgaaaagagatcacta
gagaaccaaaagagaagaaaacttgctcaagagcaaagttcggctagatctcaaaatgct
cccaatatttcaactggaaaggacaaagctccgttaacgcctaatcagaatattccactt
tataccactagcggagaaagcgttggaattaaaatgaccgactctgagatggttaacaac
tcggcattaattactaaagcaaatgaagccaataagagcatcgctgaattattgaaacag
aacctgcaaaatgagattaataaaaagagaaaaattagcaacgaagagcaagaagtagtt
aaagaatcagttgaagaagtcgttgaagaagaagacgatgtgcttgtcacatctgatcct
gaagactcgtccactgagattttgattcccaagaatgaagagattagattatgggagcca
ggatatagaaagcgatattacgaaacgaagtttcacactaaggaccctcagaaggttaag
aaaattgccaggaatatggttcaaaagtacattgaaggtgtatcatgggttcttttatac
tattatcaaggctgtccatcttggaattggtactatccataccattacgctccttttgca
gctgactttgtaaatttatctgaactcaagattgagttcgttgagggaacaccgttcaga
ccgtatgagcagctgatgagtgttttaccagccgcttcaagccataatctaccggatgtt
tttagaagcttgatgtctgatgctaattcggagatcattgatttttatccagaggagttt
cccttggacatgaatggtaagaaggtaatttggcaagccataccattgctgcctttcatt
gatgaaaacaggctgttgaaagcggtacaatcaaagtatgatcaacttaccgaagacgaa
aagtttagaaataccaacaggtcagaaattctggttctaggaagaagccattcacattat
cccacgttagtcaaggaattgtacgaagagggaaaagatagttacgaatttcaagttgac
agttcgggagtatcaggagtagcaattaaactgcagtcctttgataggtctggagttctt
cgcctacctgtcaaacaactcgaaggatatcgtcactaccctgacatttcaaatagagat
ttcctgatggtggaattcaagcaattacctaagtcacatgcaaaatctatgattctgtca
ggtttaattcctcatttgcggagactaactcaagaagataaagacagcattttgtatgga
ggaaccaatttctacggccgaaacagattcagtcctgaagagaacgctgacttcaagcaa
tacattggcccacatggaaagtcacagtacttaccaagacagggaggatataaggctttc
attcaaatccacagtgatgaggccaagggacatagacatggcatctaccacggaggaagt
catactgagactgagttccgaagaggcggaggatatcatcaacatggaaaccgtggaggt
agaggtggataccaaggaaatcagggatatcaagctaattcgggtgggtaccagaatagt
tatcaaggatcgtatcaaggcggataccgtggtgggtatcagggaggctcccagggtaga
tatcaagctggctatcagtctggctaccaaggcggttatcagggtgaatacaaaaatgga
taccaaggaggataccagggcaatcaaggtaaccagggctataatcggcaaacttacaat
gcttcaaaatcaggaactttgcctatgaaaagaaggcacaactaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (85)   
   KEGG ORTHOLOGY (1)   
   RefGene (81)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (98)   

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