KEGG   Komagataella phaffii: PAS_chr4_0238
Entry
PAS_chr4_0238     CDS       T01092                                 
Name
(RefSeq) Subunit of TFIIH and nucleotide excision repair factor 3 complexes
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
ppa  Komagataella phaffii
Pathway
ppa03022  Basal transcription factors
ppa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PAS_chr4_0238
  09124 Replication and repair
   03420 Nucleotide excision repair
    PAS_chr4_0238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppa03021]
    PAS_chr4_0238
   03400 DNA repair and recombination proteins [BR:ppa03400]
    PAS_chr4_0238
Transcription machinery [BR:ppa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PAS_chr4_0238
DNA repair and recombination proteins [BR:ppa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PAS_chr4_0238
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 8200907
NCBI-ProteinID: XP_002493646
UniProt: C4R792
Position
4:complement(480926..482569)
AA seq 547 aa
MSDSSNLLKTTVNDYLENLPESVHNKLYQSSITCLAIFRLLPSLAKFYVMSLLFNEHSVS
YIDLTRWIRPDNMTHLVSSSTKSSSSSAVTNFPGAIGKNKMYQNECLKRLKQLNLIKDVR
KQWTNPNTGQLTNVVVLQLNPMFRKNFRNALTGSQMSNDLNNDIEMTDVEEVSEEFLDRY
SLMKWENILHFMVGSEVPELPSIGVLSLLRHSGLMDIGEENEFIATPKRFKGDNMDLKSM
KITQDGFQFLLQDINAQIWQLLLQYLRMSEKLMMNPVDVLNFIFMLGSLELGKQYPVTLL
SDTQVIMLEDLVDYGLIYYPEKNRYFYPTRMATTLTSEKTTFKTASMSMNQVLEGGPEVK
DHGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMITRESVREALRNGITAD
QIIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLEVIPPTVVDQIKLWQL
EMDRLQTFAGFLFKDFANAQEFEQLANYADEVGVMLWRDDDKRKFFVTEEGIGQLNDYAN
RLKRHRA
NT seq 1644 nt   +upstreamnt  +downstreamnt
atgagtgattcttccaacctgttgaagaccactgttaacgactatttggagaaccttcct
gaatctgtgcacaacaaattgtaccaatcttcaatcacatgtttagctattttcagatta
ttgccctcactagctaaattctacgtcatgagtcttctattcaatgagcattctgtttct
tacattgacttgacaagatggatacgtccagataacatgacgcacttggtttcgtcctct
acaaagtcgtcttcgtcgtccgcagtcactaattttccaggagcaatcggaaagaataag
atgtaccaaaacgaatgtctgaaaaggttgaaacagctaaacctgatcaaggatgtcaga
aaacagtggactaatcctaatacagggcagttgacaaacgttgttgtacttcaattgaac
ccaatgtttcgtaagaattttcgtaatgctctcacaggatcccaaatgagtaatgatctc
aataatgatatcgagatgacagatgtggaggaagtttcggaggagttcctggatcggtac
tctttaatgaagtgggaaaatatcttacatttcatggtaggctcagaggtgcctgaattg
ccctcaatcggcgttctctcgttattgaggcatagtgggttgatggatattggcgaagag
aacgagtttatagccacacctaaacgtttcaaaggagataatatggatttgaaatccatg
aaaattacgcaggacgggtttcagtttttgttacaagatatcaatgcccagatatggcaa
cttctgctacagtatcttcggatgagtgaaaaattaatgatgaatccagtcgatgtgttg
aattttatcttcatgctgggttctctggaactaggaaaacagtaccctgttactctcttg
agtgacacccaagtgataatgctggaggatttggttgattatggattaatttattatcca
gagaaaaatagatacttctacccaacccgaatggcaacgacattgacatcagaaaaaaca
acattcaaaactgcatcgatgtcaatgaatcaagtgctggaagggggaccggaggtaaaa
gaccacggatctatagtgctggaaactaatttcaaactatactgttacaccacttctccc
ctacagattgctatcctgaatctgtttgttcatttgagaacaagattcgcaaatatggtt
acgggaatgatcacaagagaatctgtaagagaggctctacgtaatggaataactgctgac
caaataataaagtatttggaaacacatgcccattcacaaatgaagaaactcgcagaagaa
aaattacttaaaaagttagagttcgattcgaacgccacggaaactcaacaaatcgggtcg
caagtcaagttagaggtaattcctccaactgtagtagaccagatcaagctttggcagttg
gaaatggatcgacttcaaacttttgccggttttcttttcaaagattttgccaatgcccaa
gaatttgagcaattggctaactacgctgatgaagttggtgtgatgctgtggcgggacgat
gataaacgtaaattcttcgtcactgaggaaggaattggccaactgaatgattatgctaat
aggctaaaaagacatagagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system