KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_1077
Entry
PPUBIRD1_1077     CDS       T01975                                 
Symbol
xseA
Name
(GenBank) XseA
  KO
K03601  exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    PPUBIRD1_1077 (xseA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppb03400]
    PPUBIRD1_1077 (xseA)
Enzymes [BR:ppb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.6  exodeoxyribonuclease VII
     PPUBIRD1_1077 (xseA)
DNA repair and recombination proteins [BR:ppb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     PPUBIRD1_1077 (xseA)
SSDB
Motif
Pfam: Exonuc_VII_L tRNA_anti_2 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ADR58759
Position
complement(1212880..1214271)
AA seq 463 aa
MMPAMIKDPFERLGLDREVLTVSQLNGRARVLLEDVFRSVWVEGEISNLARPASGHMYFT
LKDSGAQVRCALFRQNATRVRQALRDGLAVRVRGKVSLFEGRGDYQLILDTVEPAGDGAL
RLAFEALKEKLGAEGLFSAERKKPLPAHPQRIGIITSPTGAVIRDIISVFGRRAPQVELN
LIPTAVQGREAIAQIVRAIRLADSLGFDALILARGGGSLEDLWCFNEEAVARAVAACVTP
IVSAVGHETDVSISDFVADVRAPTPSAAAELLAPDNSGLRQRLDGLQRRLLLRIQNRLTH
DRLRLESLTRRLRHPGERLRQQAQRLDDLDMRLRRAFMLNLNQRRERLARLDARLAAQHP
GRNLKLLNQRLDSLAERLPRAMREVLKDRRQRFQAQLQTLQVVSPLATLARGYSILLDEQ
GQAIRSAEQTRNGQRLTARLNEGELLVRVEDNHLTPVTLSLLD
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgatgcctgccatgatcaaagaccctttcgaacgactcgggctggaccgcgaggtcctt
accgtcagccaactcaacggccgcgcccgcgtgctgctggaagacgttttccgcagcgtg
tgggtggaaggcgaaatctccaacctcgcccgcccggcgtccggccacatgtacttcacc
ctcaaggacagcggcgcccaggtgcgttgtgcgttgttccggcagaacgccacgcgggta
cgccaggcgctgcgcgacggcctggcggtgcgggtgcgtggcaaggtttcgctgttcgag
ggacgtggcgactaccagctgattctcgacaccgtcgagccagccggtgatggcgcgctg
cgcctggctttcgaggccctgaaggaaaagctcggtgccgaggggctgttcagcgccgaa
cgaaagaagccactgccggctcacccgcagcgcatcggcatcatcacctcgcccactggc
gcggtgatccgcgacatcatcagcgtgttcggccgccgtgccccgcaggtggagctgaac
ctgatacctacggcggtacagggccgcgaagccatcgcgcagatcgtacgcgccatccgc
ctggccgacagcctcggcttcgatgcgctgattctggcgcggggtgggggttcgctggaa
gacctgtggtgtttcaacgaggaagccgtggcgcgtgccgtggccgcctgcgtcacgccg
attgtcagcgccgtgggccatgaaaccgacgtgtcgatcagcgacttcgtggctgacgtg
cgcgcgcccacaccgtctgctgccgccgagctgctggcccctgacaacagcggccttcgg
caacgcctggatggcctgcaacggcgccttctgctgcgcatccagaaccgcctgacccac
gaccgcctgcgcctggagtcactcacccggcgcctgcgccacccaggcgagcgtttgcgc
cagcaggctcaacgcctggacgacctggacatgcgcctgcgtcgtgcgttcatgctcaac
ctcaatcagcgccgcgaacgactggcacgcctggacgcccgcctggccgcacagcatcca
gggcgtaacctgaaactgctgaaccagcgcctggacagcctggccgagcgcctgccacgg
gccatgcgcgaggtgctaaaggaccgtcgccagcggttccaggcccagttgcagacactg
caggtggtcagtccgctggccaccctggcccgcggatacagcattttgctggatgaacaa
ggccaggccattcgcagcgccgaacagacccgcaacggccaacgcctgaccgcccgcctg
aacgaaggcgagctgctggtgcgggtcgaagacaaccacctgaccccggtcaccctctca
ctactggactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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