KEGG T01975: PPUBIRD1

Pseudomonas putida BIRD-1: PPUBIRD1_2515

Entry

PPUBIRD1_2515 CDS T01975

Gene name

ligD

Definition

LigD

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ppb Pseudomonas putida BIRD-1

Pathway

ppb03410	Base excision repair
ppb03420	Nucleotide excision repair
ppb03430	Mismatch repair
ppb03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ppb03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ppb03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ppb03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ppb03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

386012069

NCBI-GeneID:

12520710

UniProt:

E4RDG6

Position

2858643..2861147

AA seq 834 aa
MAKPLQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEA
YAKGKLRFRLQGEKLAGVWNLFRTHLAGKKEQWMLVKSHDAQARSETEYSIVEALPDSVL
SERTLVPRKSAAKKATAPRSSRKRADKVQAAPLPAQLQPQLATLVDSPPSGDWRYEVKFD
GYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDTAWLDGEMVVADENGMADFQ
ALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQQRRDTLRQLLEHNHCDVIKYSADFD
EPVESLLDSACRLKLEGLIGKRADSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSG
FGALLLALHDNESGELRYAGKVGTGFNTTTLTSIHTRLKPLEIASPALPSPPAGAEARGV
HWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMPAKTVSNRHKQANAS
ENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELF
FQKNAGQLHIPNVLSYEKAEAGQAAMVINRPDTLLGAVQMNTLELHTWNATDKDFDKPDR
FVLDLDPDPALPWKAMVEATQLALTLLDELGLKVFLKTSGGKGIHVVVPLTRRAGWDEVK
DFSHAIVSYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSV
PIWREELAQIKAANQWNITNLHERLAEVDDPWADMGKVRQSITARMRKQLGLER

NT seq 2505 nt +upstreamnt +downstreamnt
atggccaagcccttgcaggaatatgcgcgcaagcgcgacttcaacgcgacacccgagccc
agcggcaaacgcaaacgtggcaagcgggctcatgcgctgcagttctgcatccagaaacac
gacgccagtcacctgcactacgacttccgcctcgagctcgacggcaccctgaaaagctgg
gcgatccccaaaggcccatcgctggaccccaaggtgcgccgcctggcagtgcatgtggag
gaccatccgttggactacgccgatttcgaggggcatatccctgaaggccactatggtgca
ggcgatgtgatcgtctgggaccgcggtatctgggagcctgaaggcgatgcccatgaagcc
tacgccaaaggcaagctgcgtttccgcctgcaaggcgagaagctagccggcgtgtggaac
ctgtttcgcacacacctggctggcaagaaagaacaatggatgttggtcaagtcgcacgac
gcccaggcgcgcagcgaaaccgagtacagcattgtcgaggccctgccagacagcgtgctc
agcgagcgcacgctggtgccacgcaaatccgctgcaaaaaaagccactgccccgcgcagc
agccgtaaacgcgccgataaagttcaggctgcacccttgccagcacagctacagccacag
ctggcaacgttggtggattctccaccgagcggcgactggcgctacgaagtcaagttcgat
ggctaccgcattctggcccgcatcgagggccaggacatccgcctgttcacccgcaacggc
catgactggagcagcaagatgccccgtcaggttgccgccctgcgcgcgctcggtatcgac
acggcttggctcgatggcgaaatggtggtggctgatgagaatggcatggctgacttccag
gcgttgcagaatgccttcgataccgagcacgacgaacgcatcacctattacctgttcgac
ctgccatttctgggcggtcaggacctgcgacagctaccgctgcagcaacgccgcgatacg
ttgcgccaactgcttgagcacaaccattgcgacgtcatcaagtattccgccgacttcgac
gaacctgtcgagtcgctactcgacagtgcctgccggctgaagctggaaggcctgattggc
aagcgtgctgacagtgtttacagcggccgccgtagcccagactggatcaagctcaagtgc
aagcaacgccaagaattcgtgatcgtcggctacaccgaccccaaaggcagccgcagcggc
ttcggtgccctgctgctggccctgcacgacaatgagagtggcgagctgcgctatgccggc
aaggttggtaccggcttcaacaccacgacactgaccagcatccacacgcggctcaagccc
ttggaaatcgccagccctgccctgccctcgccacctgccggagccgaagcgcgtggtgtg
cactggctgcggccgcagttgttggctgaagtcgcctttgcccagatgacccgtgacggc
atcgtgcggcattcggtgttccacggcctgcgcgatgacaaggcggcaaccgccattgac
ctggagcgcgccatgcccgcaaaaactgtatccaaccgccacaagcaggccaatgcgtct
gagaatctgggtgaactgcggctgacccaccctgaccgggtcatcgatcccaccacgggt
gtgaccaagcgcgaagtcgccgagtattacgctggcatcagccagtggatcctgccccag
ctcaagcaccgcccggtggcattggtgcgcgccccggacggcctgggtggcgagctgttc
ttccagaaaaacgcgggccagctgcacatacccaacgtactcagttatgaaaaggccgag
gcaggccaggcggcgatggtcatcaatcgcccggacacgctgctgggcgcggtgcagatg
aatacgctggagctgcacacctggaacgccacggacaaggatttcgacaaaccggaccgt
tttgtcctcgacctggaccctgaccctgcgctgccttggaaggcgatggtggaggcgacc
caactggccctcaccctgctggacgaactgggcctgaaggtgttcctgaaaaccagtggt
ggcaagggtattcacgtggttgtgcccttgacccggcgcgccggctgggacgaagtcaag
gacttcagccacgccatcgtcagttacctggccaagctgtttccggagcgcctgagcgcg
gtgtcggggccgaaaaatcgcgtgggacgcatcttcatcgactacctgcgcaatggcaag
ggcgctaccacggcgtgcgcctattcactgcgagcccgtgacgggctgccagtatcggta
cctatctggcgtgaggaactggcgcaaatcaaggccgccaaccaatggaacatcaccaac
ctgcacgagcgtctggcggaggtcgacgacccttgggccgacatgggcaaggtacgccag
tcgatcaccgcgcgcatgcgcaagcagctagggctcgaaagatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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