KEGG   Pseudomonas putida BIRD-1: PPUBIRD1_3695
Entry
PPUBIRD1_3695     CDS       T01975                                 
Symbol
uvrB
Name
(GenBank) UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
ppb  Pseudomonas putida BIRD-1
Pathway
ppb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PPUBIRD1_3695 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppb03400]
    PPUBIRD1_3695 (uvrB)
DNA repair and recombination proteins [BR:ppb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PPUBIRD1_3695 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      PPUBIRD1_3695 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 AAA_22 HAMP Viral_helicase1
Other DBs
NCBI-ProteinID: ADR61284
Position
complement(4145575..4147590)
AA seq 671 aa
MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGVTGSGKTFSIANVIQQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ
MRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVFRKLPRF
TFYPKSHYVTPRETLLEAVEGIKEELKERLEYLHKANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPAGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRMPSALDNRPMRFDEWEDVSPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVAAGERVLATTLTKRMAEDLSDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADNVTGSMQRAIDETERRREKQIAFNEANGIVPKGVVKDITDIMEGATV
PGARSKKRKGMAKAAEESARYEAELRTPGEITKRIKQLEEKMMQFARDLEFEAAAQLRDE
IAQLRERLISS
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgtccgagttccagctcgtcacacgtttccagccggccggcgaccagcccgaggctatc
cgccagttggtcgaaggcattgaggcggggctgtcacaccagacgttgctcggggtgacc
ggttcgggcaagaccttcagcattgccaacgtcatccagcaggtgcagcggccaacgctg
gtgctggcgcccaacaagacgctggccgcccagttgtacggggagttcaaggcattcttc
cccaacaacgcggtggagtacttcgtttcctattacgactactaccagccggaagcctac
gtgccgtcgtcagacaccttcatcgagaaggacgcctcgatcaacgaccacatcgagcag
atgcgcctgtcggcgaccaaggcgctgctggagcggcgtgacgcgatcatcgtgaccact
gtgtcgtgcatctacggcctgggcagccccgagacctacctgaaaatggtcctgcacgtg
gaccgtggcgacaagctcgaccagcgcgcgctgctgcgccgcctggccgacctgcagtac
acccgcaatgaaatggactttgcccgcgccaccttccgggtacgcggcgacgtgatcgac
atcttcccggccgaatcggatctggaagccatccgcatcgagctgttcgacgatgaagtc
gagaacatcgccgccttcgatccgttgaccggcgaggttttccgcaagttgccacgcttc
actttctaccccaagagccactacgtcaccccgcgggaaaccctgctggaagcggtggag
ggcatcaaggaagaactgaaggagcgtctggaatacctgcacaaggccaacaagctggtc
gaagcgcagcgtctggagcaacgcacccgcttcgatctggagatgatcctcgagctgggc
tactgcaacggcatcgaaaactactcgcgctacctgtccgggcgcccggccggggcgccg
ccgcccaccctgtacgattacctgccgcccgatgcgctgctggtgatcgacgaatcacac
gtcagcgttccgcaggtcggcgccatgtacaagggcgaccgttcacgcaaggagaccctg
gtcgagtacggcttccgcatgccttcagcgctggacaaccggccgatgcgtttcgacgag
tgggaggatgtcagcccgcagaccattttcgtttcggccactccggggccctacgaggct
gagcatgccgggcgtgtggtggagcaggtggtgcgcccgaccgggctggtcgatccgcag
gtagaggtgcgcccggcgctgacccaggtcgacgacctgctgtccgagatccgcaagcgt
gtcgcggcaggcgagcgagtgctggcgaccacgttgaccaaacgcatggccgaggacctc
agcgattacctggccgaccacgacgtgcgggtacgctacctgcactcggacatcgatacg
gtagagcgggtggagattatccgcgacctgcgcctgggcaccttcgacgtgcttgtgggc
atcaacctgctgcgcgagggcctggacatgcccgaggtgtcgctggtggccattctcgat
gcggacaaggaaggttttctgcgttccgagcgctccctgatccagaccattggccgcgcg
gcacgtaacctcaatggccgggccatcctgtatgccgataatgtaacaggctcgatgcag
cgggccattgacgaaaccgagcgccgccgcgagaagcagattgccttcaacgaagccaac
ggcatcgtgcccaagggcgtggtcaaggacatcaccgacatcatggagggtgccaccgtg
cctggtgcgcgcagcaagaagcgcaagggcatggccaaggcggcggaggagagcgcccgt
tacgaggccgaactgcgtacgccgggcgagatcaccaagcgcatcaagcagctggaagag
aaaatgatgcagttcgcccgcgacctggagttcgaagctgcggcgcagttgcgtgacgag
attgcgcaactgcgggagcggttgatcagcagctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (17)   

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