KEGG T01975: PPUBIRD1

Pseudomonas putida BIRD-1: PPUBIRD1_4371

Entry

PPUBIRD1_4371 CDS T01975

Gene name

recD

Definition

recombinase D (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

ppb Pseudomonas putida BIRD-1

Pathway

ppb03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:ppb03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 Helicase_RecD AAA_19 AAA_11 Viral_helicase1 AAA_22 DUF2075 AAA_28 UvrD-helicase PhoH AAA_25 NTPase_1 AAA_5 AAA_17 NACHT T2SE AAA_18 Zot AAA_16

Other DBs

NCBI-GI:

386013872

NCBI-GeneID:

12522543

UniProt:

E4R5G9

Position

complement(4870115..4872190)

AA seq 691 aa
MSRSLVDLLPTPLHAEHLLALAPQHNSADLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWLQRISASPLVAAGDTPGQQARPLVRSGERLYLRRYWSYERRIDQALRQRLSQAEAP
PADLPERLAQLFEGGAPAGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQA
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTEVNTVHRLLGSRP
GSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGFYSPATAAWLQQVSGESLAGSGLKAGDEQRHPLAQQVVMLRFSRRFGE
GSGIGQLARLVNRQDAHAARNLLAAPPADVHSLSLKHEQDRAFDRLLLDGLNRGTDGPQG
YRSYLRTLGRYRPALDTAFDDPAWEQWAGKVLRSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSHQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDEHGQPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPEALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV

NT seq 2076 nt +upstreamnt +downstreamnt
atgagccgaagccttgtcgacctgttgcccaccccgttgcacgcagagcacctgctggcg
ctggcaccacagcacaacagcgctgatctgctgcaattactcgaccgctgggttgagcgg
ggctggctacgtgccctggaccgcgcgttcgtgtcgttcctggaggagcgtgcccccggc
agtgatcccttactattgctggcagcggcgctggccagccaccaactggggcacggacat
gtctgcctcgacctgcaacaaaccttggccgagccggatttcgccctctcgttgccgccg
gaaggtgacgcccttatcggccctttgctactgccatcgcaactgctggccaaccttgac
ttgaatgcctggcttcagcgcatcagcgccagcccgctggtggccgcaggtgatacgcct
ggccagcaagcgcggccactggtacgcagtggcgagcgcctttacctgcgccgttactgg
agttacgagcggcgcatcgaccaggccctgcgccagcgcctgagtcaggccgaagcaccg
cctgcggacctgccagagcgcctggcgcaactgttcgagggcggtgcgccagctggccag
gtggactggcagaagctcgcctgcgccttggccacccgggccggtttcagcatcatcact
ggcggacccggcaccggcaagacgaccaccgtggtgcgcctgctggcgttgctgcaggcg
ccggcagtggagcagggcaggccactgcgcatccgcctggctgcgccgaccggcaaggcc
gctgcgcgcctgaccgaatccattggccagcaagtcgagcgcctgcaagtcagcgccgaa
gtacgcgggcaaatccccactgaagtcaacaccgtgcatcgcctgctcggcagccgcccg
ggctcgcggcatttccgccatcatgctggcaacccgttaccgttggacgtgctggtggtc
gacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgccttgccgccg
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggcgcg
gtactgggtgacctgtgccgggatgctgaggagggcttttactcgccggcgactgcagcg
tggcttcagcaggtcagtggcgagtcgctggccggcagtggcctcaaggccggcgatgag
cagcgtcacccgctggcccagcaggtggtgatgctgcgtttttcacggcgtttcggtgaa
ggcagcggaattggccagctggccagactggtcaatcgtcaggacgctcacgcggcgcgc
aacctgctggccgcgccgcctgccgacgtgcacagcctgtcgctcaagcacgaacaggat
cgtgcgttcgaccgcctgttactcgacggcctgaaccgcggtaccgatggaccgcaaggc
taccgcagctacctgcgcacccttggccgttaccggccggcacttgataccgcctttgac
gaccccgcctgggagcaatgggcgggcaaggtgttgcgcagtttcgaggatttccagttg
ctgtgcgcggtgcgccggggcgcctggggtgtcgaaggcctcaacgagcgggtggcgcgg
gtgctgcacaatgccggtctgattgacagtcatcagccctggtacgaagggcgcccggtg
ttggtgacccgcaacgactacggccttggcctgatgaacggtgacatcggtattgccctg
cgcctgccggatgagcatggccagccgctgctgcgtgtggcgttcccgcgcaacgacggc
agtggtggtgtgcgattcgttctgccgagccggctcaacgaagtggaaacggtgttcgcc
atgaccgtgcacaagtcgcaaggctcggagttcagccacacagccctggtgctgccggag
gcgctcaacccggtgctgaccaaggaactggtgtacaccggcatcactcgggccaagcac
tgcttcagcctggtcgagccacggcaaggcattttcgaagaagcggtggcgcgcaaagta
cggcgtatttccgggttgatgctcgagcaggtctag

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (29)   

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