KEGG   Prunus persica (peach): 18771779
Entry
18771779          CDS       T03092                                 
Name
(RefSeq) THO complex subunit 1 isoform X2
  KO
K12878  THO complex subunit 1
Organism
pper  Prunus persica (peach)
Pathway
pper03013  Nucleocytoplasmic transport
pper03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pper00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18771779
  09122 Translation
   03013 Nucleocytoplasmic transport
    18771779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pper03019]
    18771779
   03041 Spliceosome [BR:pper03041]
    18771779
Messenger RNA biogenesis [BR:pper03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     18771779
Spliceosome [BR:pper03041]
 Complex C
  Other components
   EJC/TREX
    18771779
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    18771779
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 18771779
NCBI-ProteinID: XP_007204592
UniProt: M5VXG9
Position
G7:767630..781393
AA seq 604 aa
MEVFRRAILQPGPPENFALQTVQQVIKPQKQTKLVQDENQLLENILRTLLQELVSGEQIM
QYGQSIDDGETTQGHIPRLLDIVLYLCENEHIEGGMIFQLLEDLTEMSTMRNCKDVFGYI
ESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVN
IKGVFNTSNETKYEKDPPDGISIDFNFYKTFWSLQEHFCNPPSLTLAPTKWKKFTSGLMV
VLNTFEAQPLSDEEGDANSLEEEAANFSIKYLTSSKLMGLELKDPSFRRHILVQCLILFD
YLKAPGKSEKDLPSDSMKEEIKSCEERVKKLLEMTPPKGENFLHKIEHILEREKNWVWWK
RDGCPPFEKQPAEKKVVQEGAKKRRPRWRMGNKELSLLWKWADQNPNALTDPQRVRTPAI
TDYWKPLADDMDPAAGIEAEYHHKNNRVYCWKGLRFSARQDLEGFSRFTEFGIEGVVPLE
LLTPEERSKYQAKPNDKSKRAKKEETKGAAHQVEENQIATAANEIDGEGIRAVLEASVTP
TDTDATVATGDMSQGGSPIPDEHQKQSSDTDVGQEAGQMEADAEVEAGMIDGGMDTEVDL
DPVG
NT seq 1815 nt   +upstreamnt  +downstreamnt
atggaagtgttcaggagagccatattgcaacctggcccaccagaaaattttgctctacag
acagttcaacaagttataaaacctcagaaacagacaaagttagtccaagatgagaatcaa
ttgttagaaaatatcctccggacattgcttcaggaactggtgtctggggagcagataatg
cagtatggtcaatcaattgatgatggagaaactacccaaggacatattccacgtcttctt
gatattgtgttgtatctttgtgagaacgaacacattgaaggcggcatgatatttcagctg
ttggaagacttaacagaaatgtctactatgagaaactgcaaagacgtttttggttatata
gagagtaaacaagatatattaggaaagccagagctttttgctcgaggaaaacttgtgatg
ttgagaacatgcaatcaacttcttcgtcgcctgtcaaaggcaaatgatgtggtattttgt
ggacgaattctaatgtttttggctcattttttcccattatctgagcgttcagctgtgaat
ataaaaggagtttttaacacatcaaacgagacaaaatatgagaaagacccccctgatgga
atttccatcgatttcaacttctacaagacattttggagtttacaggaacacttttgtaac
cctccttccttaactcttgctcctaccaagtggaagaaatttacatccggtttaatggtt
gtcctgaatacatttgaagctcaaccattaagtgatgaagagggagatgccaatagtttg
gaggaggaggcggcaaatttcagcataaaatatcttacgagcagtaaactaatgggtttg
gagttgaaggatccgagtttccgacgtcatattcttgtgcagtgcctcatattgtttgat
tatctgaaggcccctggaaagagtgaaaaagatttgccttccgatagcatgaaagaggaa
ataaaatcttgtgaggagcgtgtgaaaaagctgcttgaaatgactccacccaagggggag
aattttcttcataaaattgagcatatattagaacgtgaaaagaattgggtatggtggaaa
cgtgatggttgtccaccatttgagaagcagccagcagagaagaaagtggtccaagaagga
gccaaaaagcgtaggccgagatggagaatgggaaataaagagctctctctgttgtggaag
tgggcagatcaaaatccgaatgctttaactgatcctcaacgtgttcgaacacctgccatc
actgattactggaagcccctggctgacgatatggatccagcagctggaatagaagctgaa
tatcaccacaaaaataaccgagtttattgctggaaaggtcttcgattttcagctagacaa
gacttggaagggttttctagatttactgaatttggtattgaaggagtagtgcctctggaa
cttttgacacctgaagagcggtctaaataccaagctaaaccaaatgacaagtctaaacgt
gctaaaaaggaagaaacaaagggtgctgcacatcaagtagaagaaaatcagattgcaaca
gctgcaaatgagatagatggtgaaggaatcagggctgtgcttgaagcctcagtgacacca
acggacactgatgccactgttgcaactggtgacatgtcccaaggtggcagtccaatcccc
gatgaacatcagaagcaaagctctgatacggatgtaggtcaagaggcaggccagatggaa
gcagatgctgaagtcgaggctgggatgattgatggtggaatggacacggaggttgattta
gatccagttggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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