KEGG   Pseudomonas putida F1: Pput_4392
Entry
Pput_4392         CDS       T00537                                 
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
ppf  Pseudomonas putida F1
Pathway
ppf00300  Lysine biosynthesis
ppf00550  Peptidoglycan biosynthesis
ppf01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:ppf00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    Pput_4392
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Pput_4392
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:ppf01011]
    Pput_4392
Enzymes [BR:ppf01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     Pput_4392
Peptidoglycan biosynthesis and degradation proteins [BR:ppf01011]
 Precursor biosynthesis
  Amino acid ligase
   Pput_4392
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase CBP_BcsQ
Other DBs
NCBI-ProteinID: ABQ80515
UniProt: A5W8Q5
Position
complement(4913636..4915126)
AA seq 496 aa
MMTMPLSKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAV
AYEEQGASVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLV
AQALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSH
ALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNLDDDFGR
RLAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERILRSQL
LGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPD
ALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSR
IFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEINGERHDFSD
LTEAEKALAAWEAPHA
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgatgacaatgccactaagcaaacttttcgcccacgccagccgtgatccattgattcgt
gagctgaccctggacagccgtaatgtgcgcccgggtgacttgttcctggcggtgccgggt
gccaaggtcgatggccgcgagcatatcgccgatgccctggcccgtggcgctgccgccgtg
gcctacgaagagcagggtgccagcgtgctgccgctgaccgatgcgccgctgattccggtc
aaaggcctgatcgctcagctgtcagacatcgccgggcgcttctacggtgaaccgagccgc
cagttgaatctggtcggcgtgaccggcaccaacggcaagacaagcgtgacccaactggta
gcccaggcactcgacctgcttggccagcgctgcggcctgattggcaccctggggaccggt
ttctacggcgagttgcagagcggccgtctgaccacgcccgacccgattgccgtgcaatcg
accctcaacgacctcaagaaaggcggcgccaaggccgtggccatggaagtgtcttcccat
gccctggagcaaggccgggttgccgcactggaattcgacatcgcggtgatgaccaacctg
tcccgcgaccacctcgactatcacggcagcatggaagcctatgaggccgccaaggccaag
ctgttcgcctggccgagcctgcgttgccaggtggtcaacctggatgacgactttggtcgt
cgtctggcggccgactttgcgcgtcgcccgagtgtcgaccatatcgaaacccggctgctg
agctacagcctggaaaaccctgaagcctcgctgttctgccgcgaagccgtattcagtgac
gatggcgtgcgcgccaccctcgtcaccgcccaaggtgagcgtatcttgcgcagccaactg
ctgggtcgcttcaacctgagcaacatgctggccgctgtggcgaccctgctggcgctggac
tatgcgctggacgagatcctcaaggtcacgccgcaactgcaggggccggtaggccgcatg
cagcgcctgggtggcggcgacaagccgctggtggtggtcgactatgcgcacacgccggat
gcacttgaaaaagtactcgaggccctgcgcccgcacgctcatggcaaactgttgtgcctg
ttcggctgcggcggtgaccgtgatcgcggcaagcgcccgctgatggccgaagtggccgag
cgcctggccgaccgcgtactggtcaccgacgacaacccgcgcactgaagatccgtcgcgc
atcttcgatgacattcgccccggtttcaccaggcctgacgacgtcgagttcgtcgccggg
cgtggcgaagccattgcgcacctgattgccaccgccgctgccaacgatgtgatcgtgctg
gccggcaaggggcacgaggattaccaggagatcaatggcgagcgccatgatttctccgat
ttgaccgaagccgaaaaggcacttgcagcctgggaggctccacatgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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