KEGG P.putida_F1: Pput

Pseudomonas putida F1: Pput_4937

Entry

Pput_4937 CDS P.putida_F1

Definition choline dehydrogenase (EC:1.1.99.1)

Orthology K00108 choline dehydrogenase [EC:1.1.99.1]

Pathway ppf00260 Glycine, serine and threonine metabolism

Class Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:ppf00260]

SSDB

Motif Pfam: GMC_oxred_N GMC_oxred_C FAD_binding_2 DAO Lycopene_cycl
Pyr_redox_2 Thi4 TrkA_N FAD_binding_3 ApbA
PROSITE: GMC_OXRED_1 GMC_OXRED_2

Other DBs NCBI-GI: 148550139
NCBI-GeneID: 5194007
JGI: Pput4937
UniProt: A5WA97

Position 5546106..5547803

AA seq 565 aa
MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR
RYNWAYETDPEPYMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGDGPVSVATPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFDGKRAVGVTYL
VGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFKWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTE
QDWQEFRDGIRLTREIMAQPALDPYRGREISPGAHVQTDEELDKFIREHAETAFHPSCSC
KMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLP
RSTAKYYVAGDAPVKGKPMREVKQG

NT seq 1698 nt +upstreamnt +downstreamnt
atgtcccaagaattcgattacatcatcgtcggtgccggctcggccggtaacaccctggcg
acccgcctgaccgaagacgccggcgtcaccgtattgctgctggaagccggtggccccgac
taccgcttcgacttccgcacccagatgccagccgccctggccttcccgctgcaaggccgc
cgctacaactgggcctacgagaccgacccggaaccttacatggacggccgccgtatggaa
tgtggccgtggcaagggcctgggtggctcgtcgctgatcaacggcatgtgctacatccgc
ggcaacgccatggacttcgacggctgggcagaactgccaggcctggaagactggacctac
ctcgactgcctgccgtacttccgcaaagccgaaacccgtgatatcggccctaacgactac
cacggtggtgacggcccggtcagtgtcgccacgccaaaggctggcaacaacccgctgttc
cacgccatggttgaagcgggtgtgcaagccggttacccgcgtaccgaagacctcaacggc
taccaacaggaaggcttcggcccgatggaccgttcggtgaccaagaacggccgccgctcc
agcaccgcccgtggctacctggaccaggccaagaaacgcccgaacctgaccatcgtcacc
cacgccctgaccgaccgcgtgctgttcgacggcaagcgcgccgtaggcgtaacctacctg
gtcggcgacagcgaagaacgcgtggaagcccgcgcccgcaaggaagtgatcgtcagctct
ggcgccatcgcttcgccgcagctgctgcagcgctccggcgtcggcccgcgcgccctgctg
gaaagcctcgacatcccggttgtgcacgaccttccgggcgttggtgaaaaccttcaggac
cacctggaactgtacctgcagtacgcctgcacccagccggtatcgctgtacccatcgctg
ctgtggtggaaccagccggccatcggtgccgagtggttgttcaatggcaccggcatcggc
gccagcaaccagttcgaggccggtggtttcattcgtacccgccctgagttcaagtggccg
aacatccagtaccacttcctgccggttgcgattaactacaacggctccaatggcgtgaag
gaacatggcttccaggcgcacatgggctccatgcgctcgcctgcccgtggccgcatccag
gccaagtcgaaagacccgcgccagcacccgagcatcctgttcaactacatgtccaccgag
caggactggcaggaattccgtgacggcattcgcctgacccgtgaaatcatggcccagccg
gcgctggacccgtaccgtggccgcgaaatcagcccgggcgcccacgtgcaaaccgacgaa
gaactggacaagttcatccgcgagcacgccgaaactgccttccacccgtcctgctcgtgc
aagatgggcaccgacgacatggcggtggtcgacggcgaaggccgcgtgcacggcatgaag
ggcctgcgcgtggtcgatgcctcgatcatgccgctgatcatcaccggcaacctcaacgcc
accacgatcatgatcgccgagaagatttcggacaagatccgtggccgcaagccactgccg
cgcagcaccgccaagtactacgtggcgggcgatgcgccagtgaaaggcaagccgatgcgt
gaagtgaagcagggctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-PPF (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (10)   
   PROSITE (2)   
All databases (24)

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