KEGG P.putida_GB1: PputGB1

Pseudomonas putida GB-1: PputGB1_5115

Entry

PputGB1_5115 CDS P.putida_GB1

Definition choline dehydrogenase

Orthology K00108 choline dehydrogenase [EC:1.1.99.1]

Pathway ppg00260 Glycine, serine and threonine metabolism

Class Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:ppg00260]

SSDB

Motif Pfam: GMC_oxred_N GMC_oxred_C FAD_binding_2 DAO Lycopene_cycl
Pyr_redox_2 Thi4 TrkA_N ApbA
PROSITE: GMC_OXRED_1 GMC_OXRED_2

Other DBs NCBI-GI: 167036104
NCBI-GeneID: 5872930
JGI: PputGB15115
UniProt: B0KN19

Position 5718704..5720401

AA seq 565 aa
MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR
RYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDWTY
LDCLPYFRKAETRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFDGKRAVGVTYL
VGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFKGTGIGASNQFEAGGFIRTRPEFKWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQAKSKDPRQHPSILFNYMSTE
QDWQEFRDGIRLTREIMAQPALDPYRGREISPGADVQTDEQLDKFIREHAETAFHPSCSC
KMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLP
RSTAKYYVAGDAPVKGKPMREVKQA

NT seq 1698 nt +upstreamnt +downstreamnt
atgtcccaagaattcgattacatcatcgtcggtgccggctcggccggtaacaccctggct
acccgcctgaccgaagacgccggcgtcaccgtcctgctgcttgaagccggtggccctgat
taccgcttcgacttccgcacccagatgccagctgccctggccttcccgctgcagggccgc
cgctacaactgggcctacgagaccgatcccgagccgcacatggacggccgccgcatggaa
tgtggccgtggcaaaggcctgggtggctcgtcgctgatcaacggcatgtgctacatccgt
ggcaacgccatggacttcgacggctgggcagaactgccaggcctgcaagactggacctac
ctggactgcctgccgtacttccgcaaagccgaaacccgcgacatcggcccgaacgactac
cacggtggcgaaggcccggtcagcgtcgccacgccgaaggctggcaacaacccgttgttc
cacgccatggttgaagccggcgtacaagccggttacccacgcaccgaagacctcaacggc
taccagcaggaaggcttcggcccgatggaccgttcggtcaccaagaacggccgccgttcc
agcaccgcccgtggctacctggaccaggccaagaagcgcccgaacctgaccatcgtcacc
cacgctctgagcgaccgcgtgctgttcgacggcaagcgcgccgtaggcgtgacctacctg
gtcggcgacagtgaagagcgcgttgaagcccgcgcccgcaaggaagtgatcgtcagctcc
ggcgccatcgcctcgccgcagctgctgcagcgctccggcgttggcccgcgcgccctgctg
gaaagcctcgacatcccggttgtgcacgatctgccgggcgttggcgaaaacctgcaggac
caccttgagctgtacctgcagtacgcctgcacccaaccggtatcgctgtacccatcgctg
ctttggtggaaccagccagctatcggtgcagagtggatgttcaaaggcaccggtatcggc
gccagcaaccagttcgaggccggtggtttcatccgtacccgccctgagttcaagtggccg
aacattcagtaccacttcctgccagtcgccattaactacaacggctccaatggcgtgaag
gaacacggcttccaggcgcacatgggctccatgcgctcgcctgcccgcggccgcatccag
gccaagtcgaaagacccgcgccagcacccaagcatcctgttcaactacatgtccaccgag
caggactggcaggagttccgcgacggtatccgcctgacccgcgaaatcatggcccagccg
gcgctggacccgtaccgtggccgcgaaatcagcccaggcgccgacgtgcaaaccgacgag
cagctggacaagttcatccgcgagcacgccgaaaccgccttccacccgtcctgctcgtgc
aagatgggcaccgacgacatggcagtggtcgatggcgaaggccgcgtgcatggcatgaag
ggcctgcgtgtggtcgatgcgtcgatcatgccgctgatcatcaccggcaacctcaacgcc
accacgatcatgatcgccgagaaaatttcggacaagatccgcggccgcaagccgttgccg
cgcagcaccgccaagtactatgtggcgggtgatgcaccggtgaaaggcaagccgatgcgt
gaagtgaagcaggcgtaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-PPG (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (9)   
   PROSITE (2)   
All databases (23)

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