KEGG   Pseudomonas putida GB-1: PputGB1_5401
Entry
PputGB1_5401      CDS       T00650                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
ppg  Pseudomonas putida GB-1
Pathway
ppg03420  Nucleotide excision repair
ppg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    PputGB1_5401
   03430 Mismatch repair
    PputGB1_5401
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppg03400]
    PputGB1_5401
Enzymes [BR:ppg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     PputGB1_5401
DNA repair and recombination proteins [BR:ppg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PputGB1_5401
   MMR (mismatch excision repair)
    Other MMR factors
     PputGB1_5401
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 PcrA_UvrD_tudor AAA_12 AAA_11 AAA_22 DUF5681
Other DBs
NCBI-ProteinID: ABZ01283
UniProt: B0KR78
Position
6029764..6031950
AA seq 728 aa
MHTDDLSLLLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSI
LSVTFTNKAAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSD
DQQRLIKRVMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAY
EQACERAGVIDFSELLLRALDLWRDHPGLLEHYQRRFQHVLVDEFQDTNAVQYAWLRLLA
RGGASLMAVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALI
ANNSGRLGKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSN
AQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRG
IGEKTVEAIREHARHSQLSMWEAMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPL
HTMTQTTIEQSGLILYHQEEKGEKGQARVENLEELVSAARNFESADEDADLSPLSAFLGH
ASLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERR
LAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVRLSNSVSRPFGGA
KTATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAEGSKWLML
GYAKLEAI
NT seq 2187 nt   +upstreamnt  +downstreamnt
atgcacacagatgacctctccctcctgcttaattccctcaacgatgcccaacgccaggcc
gtagcggccacgctcgggcgtcaattggtgcttgccggcgccggttccggtaaaacccgc
gtgctggtgcaccgcatcgcctggcttatccaggtagagcaggcgtcgccgcattcgatc
ctgtcggtgaccttcaccaacaaggctgctgcagaaatgcgccagcggatcgagcaactg
ctggggatcaacccggcgggtatgtgggtaggcaccttccacggcctggcccatcgcctg
ctgcgggcccactggcaggaagcacggttggttcagaacttccagatcctcgacagcgac
gaccagcaacgcctgatcaagcgggtaatgcgtgagctgggcctggacgagcagaagtgg
ccggcacgccaggcccagtggttcatcaacgggcagaaggacgagggcctgcgcccgcag
catatccaggccggtggcgacctgttcctggcgaccatgcgcgaggtctataccgcctac
gagcaggcctgcgagcgcgccggggtcatcgacttctccgagctgctgctgcgcgccctg
gacctgtggcgcgaccacccgggcctgttggagcactaccagcggcgcttccagcacgtg
ctggtggacgagttccaggataccaacgccgtgcagtacgcctggctgcgcctgttggcg
cgcggtggcgccagcttgatggccgtaggcgatgacgaccagtcgatctacggctggcgc
ggcgccaagatcgaaaacattcaccagtacaccgccgacttccccgacgccgagatgatc
cgcctggagcagaactaccgctccaccggcggcatcctcaaggctgccaacgccctgatc
gccaacaacagtgggcgcctgggcaaagagctgtggaccgacatgggcgaaggcgaaccg
ctgaccctgtacgcggcctacaacgaacatgacgaagcgcgctacgtggtagaaaccatc
gaaagcctggtcaagcagggcaatgcgcgtaacgagatcgccattctgtaccgttccaac
gcccagtcgcgggtgctggaagaggccctgctgcgcgagcgcatcccctaccgcatctat
ggcggccaacgcttcttcgaacgcgccgaaatcaagaacgccatggcatacctgcggctg
atcgaagggcgtggcaacgatgccgccctggagcgggtgatcaacgtgccgccgcgcggt
attggcgaaaaaaccgtcgaagccatccgtgaacacgcccgtcacagccagctgtcgatg
tgggaagccatgtgccagctgctcgccgccaaggccctgaagggccgcgccgccagtgcc
ctgggggctttcatcgagctgatcgaggggctggccgccaaagtcgtggacatgccgctg
cataccatgacccagaccaccatcgagcagtccgggctgatcctctatcaccaggaggaa
aaaggtgaaaagggccaggcacgggtagaaaaccttgaggaactggtcagcgctgcacgc
aacttcgaatccgccgacgaagatgccgacctctcgccactgtcagccttcttggggcat
gcctcgcttgaagcgggcgatacccaggctgatgagcatgaagacagcatccagctgatg
accctgcacagcgccaaaggcctggagttcccgtatgtgttcctggtgggcatggaagaa
ggcctgttcccgcacaagatgagcctggaagaacccggccgcctggaagaggaacggcgc
ctggcctacgtgggcatcacccgcgccatgcgccagctggtcatgacctatgccgaaacc
cgtcgcctgtatggcagcgagacctacaacaaggtgtcgcgtttcgtgcgcgaaattccg
ccaggcttggttcaggaagtgcgcctgtccaacagcgtcagccgcccgttcggtggggcc
aagaccgccaccaacagcaacctgtttgccaatgccagtattccgcagaccgcgttcaac
cttggccagcgtgtacaacatgcagtgtttggcgaaggtgtgatcctcaacttcgagggc
tcgggtgcgcaggcgcgggtgcaggtgaactttgccgaaggcagcaagtggctgatgctg
gggtatgccaagctcgaggccatctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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