KEGG   Pseudomonas putida ND6: YSA_04061
Entry
YSA_04061         CDS       T02170                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ppi  Pseudomonas putida ND6
Pathway
ppi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YSA_04061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppi03019]
    YSA_04061
Messenger RNA biogenesis [BR:ppi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     YSA_04061
SSDB
Motif
Pfam: Helicase_C DEAD P-loop_SecA AAA_19
Other DBs
NCBI-ProteinID: AFK68965
UniProt: I3UTZ4
Position
2186464..2188065
AA seq 533 aa
MHDSFKVYARDLPLVSACIFGGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHV
EILVLDEADRMLDMGFIHDVKKVLARLPAKRQNLLFSATFSKDITDLADKLLHNPERIEV
TPPNTTVERIEQRVYRLPASHKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGL
TAAAIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYV
HRIGRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDLMGFDASQVEAEKPETRE
RPQNNGRGGRNQQARGEGAKDSNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQQPRKP
RDKKPRPQQASNNGVPKPPADRDPEEFLDDEVDNFGNRADYVSPYQGKNQGRNRRPGGAG
QGQGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPRANNGGGARRDGGGGRGRPARDDAA
RQEPAVRNPRQPEKQPVIIRKESKLDRFPTPEQLDDLPSRPRGERPALLTRKG
NT seq 1602 nt   +upstreamnt  +downstreamnt
gtgcatgacagtttcaaagtctatgcccgtgacctgccactggtcagcgcctgcatcttc
ggcggcgttggcatgaacccgcagatccaggccattgccaaaggcgttgatgtgctggtc
gcctgcccaggccgcctgctcgacctggccggccaaggcaaggtcgacctggcccacgtg
gaaatcctggtacttgatgaagccgatcgcatgctcgacatgggcttcatccacgacgtc
aagaaggtgctcgcccgcctgccagccaagcggcagaacctgcttttctcggccaccttc
tccaaggacatcaccgacctcgccgacaagctcctgcacaacccggagcgtatcgaggtc
accccgccgaacaccaccgtcgagcgtatcgagcagcgggtgtaccggctgcctgccagc
cacaagcgtgccctgctggcgcacctgatcaccttgggcgcctgggaacaggtgttggtg
ttcacccgaaccaagcacggtgccaaccgcctggccgagtatctggaaaagcaaggcctg
accgccgccgcgatccacggcaacaagagccagaacgcccgcaccaaggctttggccgac
ttcaaggccaacagcgtgcgcgtactggtcgccaccgacatcgctgcccgcggcctggac
atcgaccagttgccccacgttgtcaacttcgagctgccgaatgtcgaggaagactacgtc
caccgcattggccgtaccggccgtgccggtcgttcgggcgaagctatttccctggtcgca
ccagatgaagaaaagctgctcaagagcatcgagcgggtgaccaagcagcgcatcgcggat
ggcgacctgatgggcttcgacgccagccaggtcgaagccgagaagcctgaaacacgcgag
cgcccgcaaaacaacggccgcggtggccgcaaccagcaagcccgcggcgaaggtgccaaa
gacagcaacggcggccgcaaggacaaaggcaaggacaaaggcaaagccaggcagcaagct
gcggccaagccggacgacaaggaaaagagcggcgacaagcagcagcagccgcgcaagccg
cgtgacaagaagccacgcccacagcaggccagcaataacggcgtgccgaaaccgccagca
gaccgcgacccggaagagttcctggacgacgaggtcgataacttcggtaaccgcgccgac
tatgtcagtccgtaccagggcaaaaaccagggccgcaaccgtcgcccaggtggtgctggc
caaggtcaggggcaaggcaatggtcaacgcagcaacgctggcggccaaggccaagcccgc
aatggcggccagccacgcagtggtggcggagaaaaacgcccgccccgcgccaacaacggt
ggcggtgcccgtcgtgatggcggcggtggccgtggtcgccctgcgcgtgacgatgctgcc
cggcaagagccggccgtgcgcaacccgcgtcagccggaaaaacagccagtgatcattcgc
aaggagtccaaactggaccgcttcccgacgcctgagcaactggatgacctgccaagccgc
ccacgcggtgagcgcccggcgctgctgacccgcaagggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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