KEGG T02170: YSA

Pseudomonas putida ND6: YSA_07288

Entry

YSA_07288 CDS T02170

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

ppi Pseudomonas putida ND6

Pathway

ppi03410	Base excision repair
ppi03420	Nucleotide excision repair
ppi03430	Mismatch repair
ppi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:ppi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ppi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:ppi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:ppi03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DUF3960

Other DBs

NCBI-GI:

395447571

NCBI-GeneID:

12992272

UniProt:

I3UYY8

Position

complement(3952345..3954003)

AA seq 552 aa
MKAFATLFLRLDATTSSNAKLEALRDYFDMAPADDAAWAVYFLAGGRPRQLVPTRLLREL
ATALAGLPDWLFEESYQAVGDLAETISLLLPLHPDGNEEGLATWVEQHLLPLRGLAPEQV
RQRLPPLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRLVGYTD
IGHRPTAASYQRLIAPESADEHNQRGGQPYPFFLAHPLQVSSDQFDTLLGPPSDWQIEWK
WDGIRAQVVKRDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGETEAE
LAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGDDWRSRPQHERRSQLERLVD
EHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGIWWKWK
IDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDEEMRK
VDAIIRKTTVETFGPVRSVTPTLVFELGFEGIALSRRHKSGIAVRFPRMLRWRLDKPVEE
ADDLAALQALLA

NT seq 1659 nt +upstreamnt +downstreamnt
atgaaagccttcgctacgctgttcctgcgcctggacgcgaccacctccagcaatgccaag
ctcgaggcactgcgcgactactttgacatggcgcccgccgacgatgctgcctgggcggtg
tatttcctggccggcgggcgcccacgccaactggtgcctacccgccttctacgtgaactg
gcaacggcactggctggcctgcccgactggcttttcgaagaaagctatcaggccgtgggc
gacctggccgagaccatttcgctgctgctgccgctgcaccccgatggcaacgaggaaggc
ctggccacctgggtggaacagcatttgctgcccctgcgcgggctggcgcctgagcaagtc
cgccagcgcctgccgccgctctgggcccggttggaccgcgccagcctgatgctatgcctg
aaactgatcactggcagctttcgcgtgggcgtgtcaaagctgttggtcacccgcgccctg
gcgcaactggccgggctggacgccaaacgcgtggcccagcgcctggtcggctacaccgat
ataggccatcgcccgactgcagccagttaccagaggctgatcgccccagagtccgccgat
gaacacaaccagcgtggcggccagccctaccctttcttcctggcccatccgctgcaagtg
tccagcgatcaattcgataccctgctcgggccaccaagcgattggcaaatcgaatggaag
tgggacggcattcgggcgcaagtggtgaagcgcgatggccagctgtgggtgtggtcacgc
ggcgaagaactggttaccgagcgtttccccgaactgcacggcctggcacagacgttgccc
gatggcgtggtgctcgatggcgagatcctggtctggaaacctggtgaaaccgaggcggaa
ctggccgtgcagccttttgccttgctgcaacagcgtatcggtcgcaaaacgctgggcaaa
aagctgctgaacgatgcgccggtggtgttgcaggcctacgacctgttggagtggcagggc
gatgactggcgcagccgaccgcagcacgaacgccgaagccagctggaacgcctggtggat
gaacacccacttgcccccgtgctgttgtcgcctttgctgcaaggcccggactgggccgac
cttgcccgccagcgcgaacagtcacgcagcctgggcgtggaagggctgatgctgaagcag
cgcgaggccctgtacggcgtggggcgcaccaaggacatgggcatttggtggaagtggaag
atcgacccgttcagcgtcgatgcggtgctgatctatgcccaacggggccacggccgcagg
gccagtctgtacagcgactacacctttgccgtatgggatgcaccggcaggcaccccaggt
cgggcgttggtgccctttgccaaggcctattcagggctcagtgacgaagaaatgcgcaag
gtcgacgccatcatccgcaagaccacggtggaaacgttcgggccggtgcgcagtgtgacc
ccaacgttggtgtttgagctgggcttcgaaggcatcgccctgtcccggcgccacaaaagc
ggtatcgccgtgcgctttccgcgcatgctgcgctggcggctggacaagccggtggaggag
gcagatgacctggccgccttgcaggcgctactggcctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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