KEGG   Pseudomonas putida ND6: YSA_07722
Entry
YSA_07722         CDS       T02170                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
ppi  Pseudomonas putida ND6
Brite
KEGG Orthology (KO) [BR:ppi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppi03016]
    YSA_07722
Enzymes [BR:ppi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     YSA_07722
Transfer RNA biogenesis [BR:ppi03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    YSA_07722
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC RNAseD_HRDC_C
Other DBs
NCBI-ProteinID: AFK70944
UniProt: I3UZM3
Position
4170154..4171287
AA seq 377 aa
MAIEIHWIRDDQSLAEHCRDWHLLPFVAVDTEFMRVDTFYPKAGLIQIGDGQRAFLIDPL
LIGNWQPLADLLEDSGVVKVLHACSEDLEVLLRLTGKLPQPLFDTQLAAGYLNLGFSMGY
SRLVQEVLGIELPKGETRSDWLQRPLSETQVSYAAEDAVHLAELFTVLRPRLSDDKYAWV
LEDGAELVAALRREVEPESLYRDVKLAWKLAPQQLAVLRELCAWREREARNRDVPRNRIL
KEHSLWPMAKSQPNNLSALAKIDEMHPRTIRQDGECLIQLIKRAASLPAEQWPAPLPEPL
PIEAAGLLKQLRAIGQAEGERLGIAPELMLRKKALEALLKSGYPNGPYQLPDSLRGWRRE
RMGQALLDNLAGAGETR
NT seq 1134 nt   +upstreamnt  +downstreamnt
gtggccatcgaaattcactggatccgtgacgaccagagcctggccgaacactgccgcgac
tggcacctgctgcccttcgtcgccgtcgacaccgaattcatgcgggtcgacaccttctac
ccgaaagccgggctgattcagatcggcgacggccaacgcgcctttctgatcgacccgctg
ctgatcggcaactggcaacccttggccgacctgctggaagacagcggtgtggtcaaggtg
ctgcacgcctgcagcgaagaccttgaagtgctgctgcgcctgaccggcaagctgcctcag
ccgctgttcgacactcagctggccgccggttacctgaacctgggcttctccatgggctat
tcgcggctggtgcaggaagtgctgggcatcgaattgcccaaaggcgaaacccgctccgac
tggctgcaacgcccgctctcggaaacccaggtcagctacgctgccgaagatgccgtgcac
ctggccgagctgttcaccgtgctgcgcccgcggctgagtgacgacaagtatgcctgggtg
ctggaagacggcgccgagctggtggctgcgttgcgccgtgaagtcgagcctgaaagcctg
taccgcgacgtcaagctggcctggaagctggcgcctcaacaactggcagtgctacgtgag
ctgtgcgcctggcgcgagcgcgaagcgcgcaaccgcgatgtgccgcgtaatcgtatcctc
aaggagcactcgctgtggcccatggccaaaagccagccgaacaacctgtcggccttggcc
aagatcgacgagatgcacccacgcaccattcgtcaggacggcgagtgcctcatccagctg
atcaagcgcgccgccagcctgcctgccgagcaatggccggcgcccttgcccgagccgctg
ccgatcgaggctgcgggccttctcaagcagctgcgtgccatcggccaggccgaaggcgag
cgcctggggattgcgcccgagttgatgctgcgcaagaaagccctggaggcgctgctcaag
agcggataccccaatggcccttatcaactgcccgattcgctgcgcggctggcgccgtgag
cgcatgggccaggccctgctggacaacctggcaggtgccggagaaacccgatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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