KEGG   Pseudoalteromonas piscicida: B1L02_14060
Entry
B1L02_14060       CDS       T04942                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ppis  Pseudoalteromonas piscicida
Pathway
ppis02024  Quorum sensing
ppis03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B1L02_14060
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    B1L02_14060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppis03019]
    B1L02_14060
   03036 Chromosome and associated proteins [BR:ppis03036]
    B1L02_14060
Messenger RNA biogenesis [BR:ppis03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     B1L02_14060
Chromosome and associated proteins [BR:ppis03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    B1L02_14060
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ASD68019
UniProt: A0A3B6Y4U4
Position
1:complement(3021524..3021787)
AA seq 87 aa
MAKGQSLQDPFLNVLRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQNATGSEAGDQGDEGNY
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcaaaaggccaatctttacaagacccatttttgaatgtcttgcgtcgtgagcgcatt
cccgtctcaatttttttagtgaacggtattaaattacagggcaagatccagtcatttgac
cagtttgtgattttgcttgaaaacacagtaaaccaaatggtttacaaacacgccatctcc
acagtggttccagctcgtgcggttaacttccaaaatgcaaccggaagcgaagcgggtgac
caaggtgatgaaggtaattattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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