KEGG T03411: LV28

Pandoraea pnomenusa DSM 16536: LV28_09815

Entry

LV28_09815        CDS       T03411

Name

(GenBank) ribonuclease III

K03685

ribonuclease III [EC:3.1.26.3]

Organism

ppnm Pandoraea pnomenusa DSM 16536

Brite

KEGG Orthology (KO) [BR:ppnm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppnm03019]
    LV28_09815
   03009 Ribosome biogenesis [BR:ppnm03009]
    LV28_09815
   03036 Chromosome and associated proteins [BR:ppnm03036]
    LV28_09815
Enzymes [BR:ppnm01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.3  ribonuclease III
     LV28_09815
Messenger RNA biogenesis [BR:ppnm03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LV28_09815
Ribosome biogenesis [BR:ppnm03009]
Eukaryotic type
  90S particles
   RNase
    LV28_09815
Prokaryotic type
  rRNA processing factors
   LV28_09815
Chromosome and associated proteins [BR:ppnm03036]
Eukaryotic type
  Gene silencing
   microRNA pathway
    Microprocessor complex
     LV28_09815

SSDB

Motif

Pfam:

Ribonucleas_3_3 Ribonuclease_3 dsrm DND1_DSRM

Other DBs

NCBI-ProteinID:

ALR36146

Position

1008902..1009822

AA seq 306 aa
MEFLGDSILNCSVAAILFRRYGKLDEGDLSRVRANLVKQQSLYEIAQTLGVSDFLRLGEG
ELKSGGFRRPSILADTLEALFGAMYLDGGFEAAYAVIERLYTPVLEHVDPKTLGKDAKTL
LQEYLQGHKIALPQYTVIATHGAAHNQQFEVECTVPKLDIKVGGSGASRRAAEQAAAKKA
LEEVQKMPALAKPKAEKSAKAAKKRAAKAAASEAKKAEKAGQMSVVAPVEIREPKDVKDV
KDGRESREGTAGASSAPAMTASGGNVASRAATAEKAVERTPEKAQEKTSEKASDKIDAAK
QPPAAA

NT seq 921 nt +upstreamnt +downstreamnt
ttggagtttctcggcgattccattctgaactgttccgtcgcggccattctgttccgtcgc
tacggcaagctcgacgaaggcgacctctcgcgtgtgcgcgccaatctcgtcaagcagcag
tccctgtacgaaattgcgcagacgcttggcgtgtcggatttcctgcgtctgggcgaaggt
gagctcaagagcggtggattccgtcgcccgtcgattctggccgatacgctggaggcgcta
ttcggcgcgatgtatctcgacggcgggttcgaagcggcttacgcggtgatcgagcgtctg
tatacgccggtactggagcatgtcgatccgaagaccctcggcaaggatgcgaagacgctg
ctgcaggagtatctgcaaggtcacaagattgcactgccgcagtacacagtgatcgccacg
cacggtgccgcgcacaaccagcaattcgaggtggagtgcacggtgccgaagctggacatc
aaggtgggcggatccggtgccagccgtcgcgccgcggagcaggcggccgcgaaaaaggcg
ctggaagaagtgcagaagatgccggcacttgcgaagccgaaggccgagaagagcgccaag
gcggcgaaaaaacgcgcggcgaaggccgccgcctccgaggccaagaaggcggagaaggcg
gggcagatgagcgttgtggcccctgtggaaattcgcgaaccgaaggacgtgaaggatgtg
aaggacggcagggagtcgagagaaggtaccgccggcgcgtccagcgcacccgccatgacg
gcatcgggcggcaacgtcgcgtcgcgcgcggcgacggccgaaaaggcggtggagcgaacg
cccgagaaagcgcaggaaaagacatcggaaaaggcgtccgacaagatcgacgccgccaag
caacccccggcagccgcctga

All links

Ontology (5)   
   KEGG BRITE (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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