KEGG   Pandoraea pnomenusa DSM 16536: LV28_11680
Entry
LV28_11680        CDS       T03411                                 
Name
(GenBank) uracil-DNA glycosylase
  KO
K03648  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
ppnm  Pandoraea pnomenusa DSM 16536
Pathway
ppnm03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppnm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    LV28_11680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppnm03400]
    LV28_11680
Enzymes [BR:ppnm01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     LV28_11680
DNA repair and recombination proteins [BR:ppnm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     LV28_11680
 Prokaryotic type
     LV28_11680
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-ProteinID: AIU27103
Position
complement(600529..601281)
AA seq 250 aa
MAQDSHPEAAGPLKGRIEDQFDALPRDWKTLVAPFVQSDAYASLCRFVDAEVAAGKTVYP
ADIFHALRMTSPGDVKVVILGQDPYHGDDHGIAQAHGMAFSVQRGVRVPPSLRNMYKEIE
RDLGIVPPSHGNLDAWAKQGVLLLNTTLTVEAGHAASHAKPFKTGGWQACTDTLLSGLAT
QPEPLVFMLWGSHAQAKAPLLAGHDHLLLEAPHPSPLSAHRGFLGCGHFSAANAFLEQHG
KTPIDWRLPA
NT seq 753 nt   +upstreamnt  +downstreamnt
gtggcgcaagacagccatcccgaggccgccgggccactgaaggggcgcatcgaggaccag
ttcgacgccctgccgcgcgactggaagacgctggtcgcgccgttcgtgcaaagcgacgcc
tatgcttccctgtgccggttcgtggatgcggaagtcgcggcgggcaagaccgtgtatccc
gccgacatctttcacgcgttgcgcatgacgtcgcccggcgacgtgaaggtcgtgatcctg
ggtcaggacccgtatcacggcgacgatcacggcattgcccaggcgcacggcatggcgttt
tccgtgcaacgcggcgtgcgcgtgccgccgtcgctgcgcaacatgtacaaggaaatcgag
cgggatctcggcatcgtgcccccatcgcacggcaatctcgacgcgtgggcgaaacaaggc
gtgctgctgctcaacacgaccctcacggtggaagcgggccatgcggccagccacgcgaag
ccgttcaagaccggcggctggcaggcgtgcaccgacacactgctgagcggactcgccacg
caaccggagccgctcgtcttcatgctctggggcagtcacgcgcaggccaaggcgccgctg
ctcgccggacacgaccacctgctgctggaagcaccgcacccgtccccgctttcggcgcac
cggggctttctcggctgcggccatttcagcgccgccaacgccttcctcgaacaacacggc
aagacgcccatcgactggcgcctgcctgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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