KEGG   Paenibacillus polymyxa M1: PPM_1970
Entry
PPM_1970          CDS       T01968                                 
Symbol
ymcB
Name
(GenBank) (Dimethylallyl)adenosine tRNA methylthiotransferase miaB tRNA-i(6)A37 methylthiotransferase
  KO
K06168  tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
Organism
ppo  Paenibacillus polymyxa M1
Brite
KEGG Orthology (KO) [BR:ppo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppo03016]
    PPM_1970 (ymcB)
Enzymes [BR:ppo01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.3  tRNA-2-methylthio-N6-dimethylallyladenosine synthase
     PPM_1970 (ymcB)
Transfer RNA biogenesis [BR:ppo03016]
 Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    PPM_1970 (ymcB)
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM TRAM_2
Other DBs
NCBI-ProteinID: CCC84907
Position
2254679..2256232
AA seq 517 aa
MAKETKDYSQYFDFSDAKIISEDEHSKKIRIRGREINIMAEPNHRKEKQRGKEDVQVLYD
NAVPDELKHIGEGKHYIVYTFGCQMNEHDSETIKGLLEQMGYQATEDRKEADIILLNTCA
IRENAEDKVFGELGHLKHLKTEKPGLLLGVCGCMSQEENVVNRIMQKHGFVDMIFGTHNI
HRLPQLVKEALFSKEMVVEVWSKEGDIIENLPKKREGMRAWVNIMYGCDKFCTYCIVPFT
RGKERSRRPEDVIAEVRDLARQGFKEITLLGQNVNAYGKDLKDMNYRFGDLMDDMRKINI
PRVRFTTSHPRDFDDHLVEVLGKGGNLVEHIHLPVQSGNTDILKKMNRKYTRERVLELAA
KIKAAVPHVSLTTDIIVGFPGETDEQFEDTLSLVREVGYDFAYTFIYSPREGTPAASMED
NVPMSVKKERLRRLNIAVNQNSLRFNSRLRGEVVEVLVEGESKNDSKVLAGRTRSNKLVH
FEGSKDLIGSFVQVKITEPMTFYIKGDLVQTPVAVNG
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggctaaggaaacaaaagattactcccaatattttgatttctcggatgcgaagattatt
tctgaagatgagcatagcaaaaagattcgcattcgcggacgtgaaatcaacattatggcg
gagccaaaccataggaaagaaaagcagcgtggtaaagaggacgtacaggtattgtatgat
aacgcagtcccggacgagctaaaacatatcggtgagggcaagcattatatcgtatataca
ttcggttgccagatgaatgagcatgattctgaaaccatcaaaggcttgctggagcaaatg
ggctaccaggcaaccgaggatcggaaggaagcagatatcattttactgaacacttgcgct
atccgtgaaaatgcagaagataaagtgtttggtgagctgggtcacctcaagcatctcaaa
acagaaaagccgggactgctgctcggtgtgtgtggctgcatgtcgcaggaagagaatgtt
gtgaaccggattatgcaaaaacacggttttgttgatatgatctttggtacccataatatt
catcgtttgcctcagcttgtcaaggaagccctctttagcaaagaaatggtggttgaagtg
tggtccaaggagggcgacattatcgaaaacctgccgaagaagcgtgagggtatgcgggct
tgggtaaacatcatgtatggctgtgataagttttgcacttattgcatcgttcctttcaca
cgtggtaaggaaagaagtcgtcggccagaggatgttattgctgaggtacgggatttggcc
cgtcaaggatttaaagagattaccctgctgggtcagaatgtcaatgcctatggcaaggat
ttaaaagatatgaattacagattcggggatctgatggatgatatgcgcaaaatcaatatt
ccgcgtgtacgttttacgacctcacatccgcgtgattttgacgaccatttggttgaagtg
cttggtaagggcggcaatctggtggagcatattcatctgcctgtacaatccggtaatacg
gatatattgaagaaaatgaaccgaaaatatactcgtgagcgtgttttggagctggcagcg
aagataaaagcggctgttccgcatgtttctctgacaacagatattatcgtaggtttcccg
ggtgaaacagacgaacagttcgaagatacactatctctggtgcgtgaagtgggctatgac
tttgcctacacatttatttattcaccacgtgaaggcacgccagcggcttcgatggaagat
aatgtgcctatgtcggtcaaaaaagagcgtctccggcgtctgaacattgctgtgaatcaa
aacagcctacgctttaatagtcgattgcgtggtgaggtggttgaagtgctggtggaaggc
gagagtaaaaatgacagcaaagtgcttgctggtcggactcgttccaataagctggttcat
tttgaaggttctaaggacctgattggttcctttgtccaagtaaaaattacagagcctatg
accttctacattaaaggtgacttggttcaaacgccagtagcggttaacggataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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