KEGG   Paenibacillus polymyxa CR1: X809_39105
Entry
X809_39105        CDS       T02956                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ppol  Paenibacillus polymyxa CR1
Pathway
ppol03030  DNA replication
ppol03410  Base excision repair
ppol03420  Nucleotide excision repair
ppol03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    X809_39105
   03410 Base excision repair
    X809_39105
   03420 Nucleotide excision repair
    X809_39105
   03430 Mismatch repair
    X809_39105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppol03032]
    X809_39105
   03400 DNA repair and recombination proteins [BR:ppol03400]
    X809_39105
Enzymes [BR:ppol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     X809_39105
DNA replication proteins [BR:ppol03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     X809_39105
DNA repair and recombination proteins [BR:ppol03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     X809_39105
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     X809_39105
   MMR (mismatch excision repair)
    DNA ligase
     X809_39105
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      X809_39105
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH DNA_ligase_ZBD DUF669
Other DBs
NCBI-ProteinID: AIW41877
Position
complement(5303257..5305272)
AA seq 671 aa
MNPMHRMEQLVAELNTYNYHYYTLDEPKISDKEYDVLYDELVALEQTSGLVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNMEQLRAWNARVVKLVNDYNTKNPEKPLPSPGYAIE
LKFDGLTLNLTYTDGQLVQASTRGNGVVGEGILAQVKTIKSVPLTIPFRNGTIEVQGEGI
MNLSVLSKYNETAVDPLKNARNAAAGALRNLNPKVTAERRLNAFFYNVGYADRIQFNSHQ
EMMTFLRENHFKVNPYLTYFDNFEDVMEQLIEIEESRAGLDYLIDGAVLKITDMRTREAL
GYTDKFPRWAVAYKFEAEETTTVLNSVEWNVGRTGKITPLARVEPVELAGVTVQNCTLNN
AGDIERKNLKFALGARVFIRRSNDVIPEILGKVTSENDGEEIVVPDHCPACGFPLQQRGA
HLFCDNKLGCKPQIVARISHFASRDAMDIETFSDKTAIQLHDELEVREPADLYTLQYDDL
VKLERFGEKKASNLLAALEKSKERDLASFLYALGIPNTGKATTRMLAEHYRDLHKTMSAT
VEELIELPDVGGIVAESIVAFFADPFTQAGIERMLSLGVKAQAPEAPQEKKTDSFFSGKT
VVLTGTLHQLTRDEAVSKLEALGAKVAGSVSKKTDLVIAGEKAGSKLAKAQQLGIDTIED
EDEFIRLLEQE
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgaacccaatgcacaggatggagcagcttgttgctgaactgaacacatataactatcat
tactacacactggatgaacccaagatcagcgacaaagaatatgatgtgctttatgacgag
ctggtagcgcttgaacagacgagcggtcttgtgctgccggattcgccgacacagcgtgtg
ggtggggagttactcaaaggtttcacaccgcatcgccaccttgccccattatggagcctt
gataaagctcagaatatggaacagctgcgtgcatggaacgcgcgtgttgttaaactggtc
aatgattacaataccaagaacccggagaaacctttgccatctccaggctatgctatagaa
cttaaattcgatggcctgacgctgaacctgacatatactgatggacagctggtacaggct
tctacccgcggtaatggcgtggtgggtgagggaatattggcacaggtgaagaccattaaa
tccgtgccacttacaattccttttcgaaatggaacaattgaagtacagggagaagggata
atgaatctctctgtactgtccaaatataatgagactgccgtggaccctcttaaaaatgca
cgcaacgccgcagctggcgcattgcgtaacttgaatcccaaagtgacagcagaacggcga
ttgaatgcatttttctacaatgtgggatatgcggaccgtatccagtttaacagccaccag
gaaatgatgactttcctgcgtgaaaatcattttaaggtaaacccttacctgacatacttt
gataattttgaagatgtaatggagcagctgattgagatcgaagaatctcgtgccggattg
gattacctcattgatggggcagtattgaaaattacagatatgcgcacacgtgaggctctc
gggtataccgataaattcccacgctgggcggtggcatataagttcgaagctgaggaaacg
acaacggtgcttaactcggttgagtggaatgtaggacgaaccggtaaaatcaccccactt
gcaagggtagagccggtagagctggcgggagtcactgtacaaaattgtacactgaacaat
gctggtgacattgagcgcaaaaacctgaagtttgctttgggggcacgtgtgtttatccgt
cgctcaaacgatgtcattccggagatattaggaaaggtaacgtctgagaacgacggggag
gaaattgtcgtaccagatcattgtccagcctgcgggtttccgttgcagcagcgaggtgcc
catttgttttgcgacaataagctggggtgtaaaccacaaattgtggctcgtatttcccat
tttgcttcacgtgatgctatggatattgagacattcagtgacaaaacggccatacagcta
catgacgaactggaagtgcgcgagcctgcggatctgtatacactccaatatgatgatctt
gtgaagttggagcggtttggtgagaaaaaggccagtaacctcttggcggcactagaaaag
agtaaagagagagatttggcttctttcctttatgctctgggtataccgaataccggtaaa
gcgacaacacgcatgttggctgaacattaccgtgatttgcacaagacgatgtccgctacg
gtggaagaactgatagaactaccggatgtaggcgggattgtagccgaaagcattgttgct
ttctttgccgatccatttactcaggcaggaattgaaaggatgctgtctctaggggtaaag
gctcaggcccctgaagctccacaggagaagaagacagacagctttttcagtggcaaaacg
gtcgtgcttacaggtaccttgcatcagcttacgcgtgacgaagctgtatccaagctggag
gcgctgggagccaaagttgcggggtctgtatcgaaaaagacggatctagtcatagctggt
gaaaaggctgggagtaagctggctaaggcccaacagctcggaattgacaccatagaagat
gaggatgaatttatcagactgctggaacaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system