KEGG   Physcomitrium patens (spreading earthmoss): 112274669
Entry
112274669         CDS       T01041                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like isoform X1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112274669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112274669
Enzymes [BR:ppp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     112274669
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112274669
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     112274669
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-GeneID: 112274669
NCBI-ProteinID: XP_024360099
Position
22:5078390..5082558
AA seq 425 aa
MLQRRLMCTIRTPFSRLVQKTYGTMTTPIPKWSPTFVPIQSPEHTEVSSSAPLVRIVSYN
ILAQSYVKGISFPHSPSPCLRWKNRSKAVLERLLSFDADVLCLQELDEYESYYKSRLTRE
GYSSVYIQRSGRKRDGCGIFFKRSRMELVEEQVVDFNDLVPPPTEDTPEVPSEDDSQTGS
DSVPVNNFKPEQSKSRSRSSSPVKAGPEVRGDPNDPRVRLKRDCVAILAAFRMLGAPNKF
MILGNTHLYWDPEWADVKLAQARYLLLQIVKFQQGLCSKLDSNPLLLVCGDYNSTPGDQV
YRYITSGSKQSSTLEGKTDSILEEKLTNLSLGSSESNRGEEQLPERAPLPLLSLYEEALG
AHPNTNVTPGFTGTLDYIFFRPTDSLRFINLLALPTRDSPDLEGGLPNYSHPSDHLPIGA
DFAVQ
NT seq 1278 nt   +upstreamnt  +downstreamnt
atgcttcagcgccgccttatgtgcacaattcgcacacccttcagccgacttgtgcagaag
acttatggtacaatgaccacccctattccaaaatggtcacccactttcgtcccaattcaa
tctccagagcatactgaagtgtcatcttccgctccattagttcgcatagtttcctacaac
atacttgcgcagtcatacgtcaagggcatttcttttccacattctccatccccatgctta
agatggaaaaaccggtccaaggctgttttggaacggcttttatcatttgatgcggacgtg
ctgtgtttgcaggaattggacgaatatgaaagctattacaaaagccgattgactagggaa
ggctacagcagtgtttacattcagcgcagtggtaggaaacgtgatggttgtggaatattc
tttaaacgcagcagaatggaacttgtggaggagcaagtagttgattttaatgatcttgtt
cctcctcccacggaggatacacccgaggtaccctcagaagacgattcccaaactggaagt
gattctgttcctgttaataattttaaaccagagcagtcaaagagtcgatctcgatcatcc
tcacctgtcaaagctggtccagaggttcgaggagatcctaacgacccacgtgttcgcctc
aagcgagattgtgtggctatattggctgcctttcgcatgctgggggcaccaaataaattt
atgattcttggaaatactcatctttactgggatccagaatgggccgatgtgaaattggct
caagcaaggtacctacttttgcaaatcgtgaaattccaacagggcctatgttctaagcta
gatagcaaccctctgctgcttgtatgcggggactacaattcaacaccaggcgaccaggtg
tatcgatatatcacctcaggttcaaaacaaagctctacattagaagggaagactgacagc
attttggaagaaaaactcactaatctcagtttgggtagcagtgaaagtaaccgcggggag
gaacagttgccagaaagggccccgctccctttattgagtctctacgaagaagctctcggt
gcgcatcccaacacaaatgtgactcctggattcactggcaccctggattacatattcttt
cgacctactgattctttgcggtttatcaatttactggctcttccaacccgggactctcct
gaccttgaaggcggtcttcctaattacagtcatccaagtgaccatttgcccattggcgca
gacttcgcagtgcagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

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