KEGG   Physcomitrium patens (spreading earthmoss): 112278897
Entry
112278897         CDS       T01041                                 
Name
(RefSeq) THO complex subunit 1-like
  KO
K12878  THO complex subunit 1
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03013  Nucleocytoplasmic transport
ppp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112278897
  09122 Translation
   03013 Nucleocytoplasmic transport
    112278897
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppp03019]
    112278897
   03041 Spliceosome [BR:ppp03041]
    112278897
Messenger RNA biogenesis [BR:ppp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     112278897
Spliceosome [BR:ppp03041]
 Complex C
  Other components
   EJC/TREX
    112278897
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    112278897
SSDB
Motif
Pfam: efThoc1 Trypan_PARP
Other DBs
NCBI-GeneID: 112278897
NCBI-ProteinID: XP_024368552
Position
2:complement(3034346..3037537)
AA seq 659 aa
MEIQDSVAAACHADRQRLLEVFRVAIAKPLPASQTAVATMVEAVKPQKQTVLVQDENQLL
ENGLRTLLEELVGAAVANGKSVMQYGRAEGPEDDGNGLLTRLLDIVLYLCEKGNVEGGMI
FQLLEDLTEVSTIKDCKEVFGYIEGKQETLGKSELFSRGKLVMLRTCNQLLRRLSKTNDV
VFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKEPPGDSPAIDFTFYKTFWSLQE
YFSNPTTLTHPSKWQTFSSNLGIVLETFEMQPIGEEDESLSLDGDDDSTFNIKYLTSSNL
MSLELKDPGFRRHVLVQCLIIFDYMKTPGKAEKDGPREGVREELKVHEDRVKKLLRTTPP
KGREFLASIEHILERDKNWVWWKRDGCIPFERFVQEKKIPSDPPKRRPRWRLGNRELSRL
WKWSDDNPNAITHAKRVKMPPLAEYFKPLAEDMDPEAGIEEEYHHKNNKVYCWKGLRFAA
RQDLDALSRYSDMKIMGVVPPDLLTPEVRSSLYKPTDRPKAKGVKKDEEYTPNLTQTEDA
SGSAPTSVSLMELDATTLARDPEEATAMDADGPAVADVEPEADPEPEAEAEPEPEPEPVV
EPVPLTDLSDAKPETVQTPVEAEPSSSKVVSEPPPVGNQSPSPLKSEARSGKKRAHPDD
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggaaatccaagattctgttgcagctgcttgccatgctgaccgacagcgcctgcttgag
gtctttcgagttgccatcgccaagcctttgcctgcatctcagactgcagttgctaccatg
gttgaagccgtgaaaccccaaaagcagactgttctagtacaggacgagaaccagctcttg
gagaatggcttgagaacccttcttgaagagcttgtcggtgcagcagttgcaaatggcaag
tcggtcatgcaatatggtcgagcagagggtcccgaagatgatgggaatggtcttctcaca
agacttcttgacattgtcttgtacttgtgtgagaaaggcaatgtcgaagggggcatgatt
ttccaattacttgaggatctaacagaggtttccactattaaggattgtaaggaagttttt
ggatacatagaggggaagcaagagactcttggaaagtcggagcttttcagtaggggcaag
cttgttatgttacggacttgcaaccagctccttcgccggttgtccaagacaaatgatgtc
gtcttttgtggcaggatcttaatgtttctggctcattttttccccctctctgagagatcg
gccgtgaacattaaaggagtatttaacacctcgaatgaaaccaagtacgagaaagagccg
cctggggatagtccagccattgattttacgttctacaaaaccttctggagccttcaagaa
tacttctccaaccctactaccctaactcacccctcaaagtggcagaccttttcttcaaat
ttaggaatagtgctggagacctttgaaatgcagcctataggtgaggaagacgaaagctta
agtctagatggcgatgatgactcaacattcaacattaagtaccttacgagcagtaatctc
atgagcttggaactgaaggaccctggtttccgtaggcatgtcttagttcagtgtctaatt
atatttgattacatgaagactcctggaaaggcagagaaagatgggccacgggagggtgtt
cgtgaggagctcaaggtgcatgaagatcgtgtgaagaagctgctgaggacaactcctccg
aagggaagagagtttcttgcttccattgagcacattcttgagcgcgacaaaaattgggtc
tggtggaagcgtgatgggtgtattccgttcgagcgttttgtgcaggagaagaaaatacct
tcagaccctccaaagagaagacctagatggcgacttggaaatagagagctttctcgcctt
tggaagtggtctgatgataatcccaacgccattactcatgccaaaagagtcaaaatgcct
cccttggccgagtacttcaagcctcttgctgaagatatggaccctgaagcaggaatagag
gaagagtaccatcacaagaataacaaggtctactgctggaagggccttagatttgctgca
agacaagatctcgatgcattgtcaaggtactcggacatgaaaatcatgggtgtcgtacct
ccagatctcctcacccctgaggtgcggagttcactttacaagcctacagaccgacctaag
gcaaagggggtgaaaaaagatgaagaatacactcccaatcttactcagacggaggatgca
tcaggaagtgcacccaccagtgtgagcttgatggagttggatgccacgacgcttgctcga
gatccagaggaagctactgctatggacgcagatggtccggcagtagcagacgtagagcct
gaagcagacccagaaccggaagcggaagcggagccagagccagaaccggagccggtggta
gaaccggtgccactaactgatctgtcagacgcaaaaccagaaacagttcaaacgccggta
gaagctgaaccttcttcatctaaagtagtctccgaacctccgccagtaggaaatcaatct
ccaagtcctctaaagtcagaagctagaagtggtaaaaaaagggctcaccctgacgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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