KEGG   Physcomitrium patens (spreading earthmoss): 112292896
Entry
112292896         CDS       T01041                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020  RNA polymerase
ppp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    112292896
  09124 Replication and repair
   03420 Nucleotide excision repair
    112292896
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppp03021]
    112292896
   03400 DNA repair and recombination proteins [BR:ppp03400]
    112292896
Enzymes [BR:ppp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     112292896
Transcription machinery [BR:ppp03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     112292896
DNA repair and recombination proteins [BR:ppp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      112292896
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 112292896
NCBI-ProteinID: XP_024397633
Position
15:complement(10898072..10904099)
AA seq 1240 aa
MMDSRNCPPPAFARPIYPEDFNNPLEVVQDSTTTQAYFQATESTRHFYPTRSPRRSPGRS
PHRSEGRLSRSEEEVARSAVAKIIFKGRSLVEHHLRSFNEFMEYGLPAMFEEAGSFDCIP
DHSVLVDSGIGVRKWARIVYGEVAVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLY
VNMTLEVYENRGNKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHGLSEKDSVAKGHC
SFDDGGFFIIKGSEKVLIAQEEKAHQSIYVSYLKRTDTWIATYSPTWRGFNSNQMNRGKT
FVKLRMRKKAELLVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFHDLLLSS
IWDADLILEEFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQL
FVHTEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQFRKAMAH
LERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTNEGLKSSGVVAVLK
RMNPMATLSHLRQFRLNLPPPMKPTDPARHPNYSYWGRICPTQTSDGAECGLIKSLALTC
VVSSDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYDYNATLAIVATL
RQLRREQLLHGEIEVARDPKTKAVHIHTDAGRLLRPLLIVKEQKLAMSKQHLKTLRAMSK
QESAEACWNFLLEQQVVELLGTEEEEGALIALNRDDLERARKDPDAPLYTHSEIDVSYIF
GLGASVIPFLDHNQASRNLYQAEKHCKQAMGFYTSNLSGRSDCSGHQLFYPQKPLVTTRT
WDYLKKPEITNGQVAIVSIQCCGYNQEDSIIMNRASIDRGLFRSMHFKTYRGEERHNVIE
HFAKPSISIAKRSRNASLNKIDEDGFPHLGDYLEKGDIIIGKLTAEMGNPKLADSSQRLR
AHENGRVDQVLLSSEEDGHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFT
RQGVVPDIIINPHALPNRQTVGQLLESLLGKLMAVRGTQQSVAPFQKQSATRKFMDQLHQ
SEYQRGGSESMTNGTTGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVK
NRKNMGGVKFGEMERDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRF
CKFCCTGKHVVQIQIPYSCKLLWQELLSMGITLFLETKLS
NT seq 3723 nt   +upstreamnt  +downstreamnt
atgatggactccaggaattgtccaccgcctgctttcgcgaggccaatttacccagaggat
ttcaacaaccctctggaagttgtgcaagactcgaccacgacccaagcttattttcaggct
accgagagtacccgccatttctacccaacacggagcccaagacggagtccgggtaggagt
cctcaccgttccgaaggacggctctcgagatcggaagaggaagttgcacgcagcgcagta
gcgaagataattttcaaaggaagaagcttagtagagcatcacttgcgatcctttaatgaa
ttcatggaatatggtttaccagccatgtttgaggaggctggcagtttcgactgcattccg
gatcactccgtcctggtggattccgggattggagtgcggaagtgggctagaattgtgtat
ggagaagttgcggtagggaagccatacactactttcacccgagaaggagtaaaggaggtt
gtggatctattgcctcacgaagctcgacttcgaaatctgtcgtattcggctcacttgtat
gtgaacatgacactggaggtttacgaaaacaggggaaacaagaagacgcaaaatccggag
gatatgatcgaaacaaaaactgatacaatttgcgtcgggaaagtcccggtcatggtgaac
tcaagtttctgccaccttcacggactttctgagaaggattcggttgcgaaaggacactgt
tcattcgatgatgggggtttcttcatcatcaagggttcggagaaggtgttgatcgctcaa
gaggaaaaggcgcaccagagtatttacgtgagttacttgaagaggacagatacttggata
gcgacgtactcgcctacatggagaggcttcaattcgaatcaaatgaatcgaggaaaaact
tttgtaaagcttcggatgagaaagaaagccgagttgttggtgggagtacctggcctcacg
gaaccagtaccccttgtcatattattcagagccctcggaacatcttctgacaaggaattc
cttgagagcatctgctacgactccaccgattctcggttccatgacctacttctttcctca
atttgggacgcagacctaattttggaggaatttcagtcgagaatttcataccctgctggt
gcctcggcaatcaagtctgtgagggatcagattctttcggtgaggtttcttggtacgaag
ctacgaaattctaggcatgtgccttccgtcgaggctgggaaaactatcatcgggcagctt
ttcgtacatacggaaggaggatacacgaggaaggcaatgctgcttggatacatggtgaat
cagctgtgctcaacattcttggggagacgactggaagatgacaaggaccacttcaaaaat
aagaggcttgatctcacgggacaattgctgagccaccagtttcgtaaggcaatggcacac
ttggagcgcgacgtgaagagacgactccatccttacctggtgaagggcagggacttggct
cctctgaaaacatacgtgacggaggcaatcgtgacaaagcagatgcagagcgcgttcacc
ttgggcaactggaacaccaacgaggggttgaagagctcgggtgtagttgcagttctgaaa
aggatgaaccccatggccactctatcccatctgcgacaatttcgactgaatctgccgccg
ccaatgaaaccaaccgaccccgcaagacacccaaactactcttactggggcaggatctgt
ccgacccagaccagcgatggagcggagtgtggccttatcaaaagcttggccctaacctgt
gtggttagctcagatacgccagaggaaccggtgttgcatgttttgagtgattgtggaatg
cactctctggaagaaattactcctcttacaatttcaatggcagagaagatatttgtgaat
ggccgctgggttggaatcttctacgactacaatgcaactctcgctattgttgctactctg
aggcagctacgccgcgaacagcttcttcatggagagattgaagtagcacgagaccccaaa
accaaagcggtgcatattcacacagatgcaggcagattgcttcggccacttctgattgtc
aaagaacaaaagttggccatgtcgaagcagcatttgaaaacgcttcgagctatgtccaaa
caagagagtgctgaggcttgctggaatttccttttggaacaacaggtggtggaactcttg
ggcacggaggaggaagagggagcactaattgctttgaaccgagatgatctggaacgagct
cggaaagacccggatgctcctctgtacacccactcagaaatcgatgtctcctacatcttt
gggttgggcgcctcagtgattccgtttctggatcacaaccaagcatctcgtaatctgtat
caagcggagaagcattgcaagcaggctatggggttctacacctccaacttatcgggcagg
tcggactgttctggacaccagctcttctacccccagaagcccctcgtcacaacgcgcaca
tgggactatctcaagaagccagagatcacaaatggccaggttgcaattgtgagcattcag
tgctgtggctacaaccaagaggactccatcatcatgaaccgagcttccattgatcgaggc
ttgtttcgatcgatgcatttcaaaacttaccgaggagaggagaggcacaacgtcatagag
cattttgccaagccgagtatttccattgcaaaaagatccaggaatgcatctctaaataaa
attgatgaggatggctttcctcacctcggagactacctggagaaaggagacatcatcatt
ggaaaattgaccgctgaaatgggaaatcctaagcttgcagactcaagccagcggttgaga
gcacacgaaaatggtcgagtggatcaggtgcttctatccagcgaagaggatggacatcgc
attgccaaagtacgactgagatgctcccgacgacctcaagccggcgacaaattctcaagc
atgcatggacaaaagggcgttatcggagctgttttgaaccaagaggatcttcccttcaca
cggcaaggagttgtgccggacatcatcattaatcctcatgcgcttcccaaccgacagaca
gtcggacagctcctggaaagcctattaggcaaattgatggcagttcgaggcacccaacaa
tctgtagcccctttccagaaacaatccgcaactcgcaaattcatggatcagctccaccag
tctgaataccagagaggaggcagcgagtccatgaccaacggcaccacggggatgagactc
aactctctcatcagcataggagccacattctaccagcgcctggaccacatggtcgaagac
aagatcaagtaccgggggagtggcggtcccgtggacgccctcacgcggcaaccagtcaag
aaccggaagaacatggggggcgtcaagttcggcgaaatggagcgggattgcatgatcggc
cacggcgcttccgtcactctccgggaacgctgcttcctcttgagcgacccctacgcaatg
ttggtgtgctcgtcttgccggcgcccttccggtcacaccgacccatctcgccgacgtttc
tgcaagttttgttgcaccgggaaacacgtcgtccagatccaaatcccttactcctgtaaa
ttgctgtggcaggagcttctcagcatgggcatcactctcttcctagaaacgaaactctct
tga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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