KEGG   Physcomitrium patens (spreading earthmoss): 112295196
Entry
112295196         CDS       T01041                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE-like
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112295196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ppp03036]
    112295196
Chromosome and associated proteins [BR:ppp03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112295196
  Chromatin remodeling factors
   NuRD complex
    112295196
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like Helicase_C Chromo HDA2-3 DUF1087 ResIII PHD Hc1 CHDCT2 DEAD AAA_22 zf-RING_15
Other DBs
NCBI-GeneID: 112295196
NCBI-ProteinID: XP_024402239
Position
18:13588408..13603385
AA seq 1585 aa
MTKEDFTDEPVNEGGDGDEEYSLVTERLRQRTNRKPVYVEEEEGMEEDEWEEEADEGEEE
EDEEKEVLKMEQSEDFCSICHLGGDLLCCDTCTAVFHLGCLDPPMKVVPRGKWSCPKCAD
PLGDVEKFIDTQMRPMKVPGKLPVNVEDKGSEDQPQKLVKQYLVKWKSRSYLHCSWVTAE
DLERGMKNFAGLRMKLNHFHKMLDGTRNWNTPDEDRMPIRPEWTTVDRVLDMRHNGDITE
YLVKWKELGYDEATWEVEEDVLAFQAEIDKFKEIMSRQVLKKRKGSALDSKDLKRRRKDF
KPFKKTPKFLIGGSLHPYQLEGLNFLRFAWEQNKHVILADEMGLGKTIQSISLLGSLVEE
NVGLPHLVVAPLSTLRNWEREFATWCPQMNVVMYVGSSQARAILRQYEFFFPQKSSKKSK
DKGKKKMAGESKQDRVKFDVLLTSYEMINLDTAILKALKWECLIVDEGHRLKNKDSKLFQ
TLTTFSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFNSLEEFQQEFQDINQEEQVGRLH
KMLAPHLLRRVKKDVLKEMPPKKELILRVELSSLQKEFYKAILTKNYQILAKQGGPQVSL
TNVVMELRKLCGHPYLLEGVEPTVRNQAEANRQLLENSGKLLLLDKMMTKLHAQGHRVLI
YSQFTRMLDILEDWLHLKKWGYERIDGKISGSERQIRIDRYNAPNSTKFCFLLSTRAGGL
GINLATADTVIIYDSDWNPHADLQAMARAHRLGQQNKVMIFRLVTRGTIEERMMQMTKKK
MVLEHLVVGRMKKENINQEELDDILRYGAMELFSEKDEDGKTRQIHYDDAAIDRLLDRAQ
VNDEEEKADDEEDSDLLKAFKVANFDYINDEDAAAAAAEEAEREARAKLEAEMEGQGRAQ
FWDSLLKDRVVEQQVEEFEELGKGKRSRRQVRPGLYSQEDDLAGMAEMNSDDGQEPEWAP
TADADSPGSNGEVGEVSGSKKLQPSRKRVKERMTGEPPPLMEGEGRELRILGFNHRQRSV
FVNVLMRFGLGDFSWSEFIPRLKPKTPEEIKDYGTLFLSHIAEDINDSPFFSDGIPKEGL
RIQDVLVRLAILHLIRDKVKALTEDPAMPLFSQGSHMYRYYSLRNTKVWKEEHDRKLLYA
ICSRHGYGRWLSIVEDPQLGLGPVIRGELLLRGVNDSAGPSKNGDARPGESEDPSGRGEA
PAPADEEGPPGLPVGADREEREAYLQKRMVDFVKRRVLVLEKVLNAEYHCTGADQVQVEE
PPPQMMTNEQAMRGHQAPQMMMNDPHMRSHQVPQTIMNDHGMRGYQTPQMMMNDPMMRGY
QSPQMMNNNMGMGAQQQSQYHPMQQMRPHVQERGPLPPRHPVQISPEELAANAFDKEEGR
LKVAHIYNQICATVNENEGDAIQAYGGNKSAGLRVRKALREIEILCVDMRNALFDQPLRK
STGRKKKADGAEGAEPAVEGAKEDGVDGQSDDGLEDFNEEFDREIDSDIECDVETRRPSS
PTPTSEPGNEVHEYQFLKNADADAGERSWPQGLQTLKPGMRVDLGGPRHSPLQMTPPAHA
APTPSVAPQYEEGKWPPAVVYLDRD
NT seq 4758 nt   +upstreamnt  +downstreamnt
atgactaaagaggactttacggacgagcctgtgaacgaaggcggcgatggagatgaggag
tacagtctcgttacggagagattgaggcagcggacaaatagaaaacctgtgtatgtagaa
gaggaggaaggtatggaagaagatgaatgggaagaggaggcagatgagggtgaagaagag
gaagatgaggagaaagaagttcttaagatggaacagagtgaggacttctgcagtatttgc
catctgggaggagatttgttgtgttgtgacacatgtacagctgtgtttcatcttgggtgt
ttggatccgcctatgaaagttgtgccacgaggcaaatggagctgtcccaaatgtgcagac
ccacttggtgacgtggaaaagttcattgatactcagatgagaccaatgaaagttcccggc
aaacttcctgtgaatgttgaagacaaaggttcagaagatcaaccacagaagcttgtaaaa
caatacttggttaagtggaagtctagatcttatttgcactgctcatgggtcactgcagaa
gacttagagaggggtatgaagaactttgcaggtctaagaatgaaactcaaccattttcat
aagatgctcgatggaaccagaaattggaacacacccgatgaggatcgcatgcctattaga
ccagagtggactactgttgaccgtgttcttgatatgaggcataatggtgatatcacggaa
tacttggtcaaatggaaggaacttggttacgatgaggccacatgggaagttgaagaagat
gtcttagcttttcaagcagagatagataaatttaaggagattatgagtcgtcaagtattg
aagaagcgaaaaggttcagcgctcgacagtaaagatctcaagcggcgaagaaaggacttc
aaacccttcaaaaaaacgcctaaatttttgattggaggttcgctgcatccatatcagctg
gagggcttaaactttctgcggtttgcatgggagcaaaacaagcatgtaatattagctgat
gaaatgggtttgggtaaaacgattcaaagtatctcacttttgggatctttagtggaggag
aatgtgggtctgccccatctggtcgtagcaccactctccactttacggaattgggagcgg
gaatttgccacttggtgtcctcaaatgaatgtggtcatgtacgttggatcctctcaagcg
cgggccattcttcgccagtatgagttcttttttcctcaaaagagttcaaagaaatcgaag
gacaaaggaaagaagaagatggcaggggagagcaagcaagaccgagtaaagtttgacgtg
ttgctgacatcttatgagatgataaatcttgatactgcaatccttaaagctcttaagtgg
gaatgtttgattgtggatgagggacatcgtttgaaaaacaaggattctaagctttttcaa
accctcacaactttctccacccgccaccgagtcctcctcacagggacacccttacagaac
aacctggatgaactcttcatgctgatgcactttctcgatgcaggcaagtttaatagttta
gaggagttccagcaagagtttcaagacattaatcaggaggagcaagttgggcggctgcac
aagatgttggcacctcacttactacgcagagtgaagaaagatgtcttgaaagaaatgcca
cctaagaaggaactcattctgcgggtggagcttagtagcctacagaaggagttttacaaa
gcaatattgacaaaaaactatcagattttggctaagcagggtggtcctcaggtttcactt
accaacgtggttatggaactacgtaaattgtgtggacacccttaccttttggagggggtt
gaacctactgtgagaaatcaggctgaagcgaacaggcagttgttggagaattcagggaag
ctattactgctggataaaatgatgacaaaattacatgctcaaggccaccgagttctcata
tattctcagttcacgcgcatgcttgatattctggaagactggctgcatttgaagaaatgg
ggttatgagcgaatagacggtaaaataagtggatctgaacgccaaatccgaatcgatcgg
tacaacgcacctaactccaccaagttttgcttcttgttatcgactcgagctggaggcttg
ggtattaacttggctacagcagacactgtcattatatatgatagtgattggaatcctcat
gcagatcttcaagctatggctcgggctcatcgactaggtcaacaaaataaggtgatgatt
tttcgtcttgttactcgtggaacaattgaagaaagaatgatgcaaatgacaaagaaaaaa
atggtcttagagcatctggttgtaggccgcatgaaaaaagaaaacatcaatcaggaggaa
cttgatgacattttgcggtatggtgcaatggagttgtttagtgaaaaggatgaagatgga
aaaacacgtcaaatccactatgacgatgctgccattgataggcttttggatcgagcccaa
gttaatgatgaggaagagaaagcagatgacgaagaagacagtgacttgttgaaagctttc
aaggttgcaaattttgattacattaatgacgaggatgcagcagcggccgctgctgaggag
gctgagagggaggcccgtgccaagctggaggctgaaatggaggggcaagggcgggcacag
ttttgggatagtttgttgaaggaccgagttgtcgagcagcaagtggaagagtttgaagag
cttgggaaaggcaagcggagtcgcagacaggtgagacctgggttatattctcaagaggat
gatctagcaggtatggctgagatgaattccgatgacggacaagaacccgagtgggcgcct
actgcagatgcagactctcccggttctaatggtgaggttggtgaagtttcgggtagtaaa
aagttgcagccctcgaggaagagagtcaaagaacgtatgacaggcgagccaccaccgttg
atggaaggagaaggccgagaacttcgaattctcggattcaatcataggcagcgttctgta
tttgttaatgtcctgatgaggtttggcttaggagatttcagctggtctgagtttattcct
cgtctgaagccaaaaacacctgaggagattaaggattatggcactctattcttgagccac
attgcggaggatatcaacgactccccttttttctctgatggtatacccaaggaaggtctt
cgtatccaagatgtcttggtacgactggcgattttgcaccttattcgcgacaaggttaaa
gcgctgacagaagacccagcaatgcctcttttttctcaaggttcacatatgtatcgttat
tattctcttcgaaatacgaaagtctggaaagaggagcacgatcgcaaactgttgtacgca
atatgctcacggcatggctatgggaggtggctgtcgattgtggaagatcctcagttgggg
ttgggccctgtcattcgcggtgagctgcttctgcgaggtgttaatgatagcgctgggcct
tctaaaaacggtgacgctcgtccgggtgaatcagaggacccttcaggacgtggtgaagcg
cctgctcctgctgatgaggaaggacctcctggattgccagttggggctgacagagaagag
agagaggcttatctgcagaaacggatggttgacttcgtaaagagaagagttttggttttg
gagaaggtcttgaatgcagaatatcattgcacgggggctgaccaagttcaggttgaggag
cctcctccgcaaatgatgacgaatgaacaagctatgagaggtcaccaagcaccacagatg
atgatgaatgatcctcatatgagaagtcatcaggtaccacagacgataatgaatgatcat
ggcatgagaggctatcaaacgccgcagatgatgatgaatgatccaatgatgagaggctac
cagtcgcctcaaatgatgaacaacaatatgggaatgggtgcccaacaacaatcgcaatat
catccaatgcaacagatgcggcctcatgtgcaagaacgtggtcctcttcctcctcggcat
cctgtgcaaatttcacctgaagaacttgctgcaaatgcttttgacaaagaagaaggtcgc
ttgaaagttgctcacatctataatcagatatgcgcaacagtaaatgagaacgaaggcgac
gccatccaagcttatggtgggaacaagtcagcagggcttcgagtccgaaaggcattacga
gagattgagatcctttgcgtagacatgcgaaatgctttgtttgatcagccacttcgaaag
tcgactggccgtaagaaaaaagcagatggtgcagagggagctgagcctgctgtagaggga
gccaaagaagacggagttgatggccagtctgacgatggactcgaagacttcaacgaagaa
ttcgatagagagatagactccgacattgaatgcgatgtagagaccaggcgaccctcatct
cctactccaactagtgaacccggcaacgaagttcatgagtaccagtttcttaagaatgca
gatgcagatgcgggtgagcgttcatggccacagggcttgcaaaccctgaagcctgggatg
agggtcgacttgggcggaccaagacactctccactacagatgacgcctcctgctcatgct
gctcccacgcctagcgttgctcctcagtacgaagaaggcaagtggcctcctgccgttgta
tacttggacagagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (13)   
   Pfam (13)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system