KEGG   Physcomitrella patens subsp. patens: PHYPADRAFT_111057Help
Entry
PHYPADRAFT_111057 CDS       T01041                                 

Definition
hypothetical protein
Orthology
K03144  
transcription initiation factor TFIIH subunit 4
Organism
ppp  Physcomitrella patens subsp. patens
Pathway
Basal transcription factors
Nucleotide excision repair
Module
Holo-TFIIH complex
Brite
KEGG Orthology (KO) [BR:ppp00001]
 Genetic Information Processing
  Transcription
   03022 Basal transcription factors
    PHYPADRAFT_111057
  Replication and repair
   03420 Nucleotide excision repair
    PHYPADRAFT_111057
Transcription machinery [BR:ppp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PHYPADRAFT_111057
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
AA seq 462 aa AA seqDB search
MPRVRVVSRNFMEMVAALPAAKLDLLYDRHWTCQAVFRSLPPLAKQYVLRLLWVENAVPL
KSWQEWARPEALSKHQIAIDRLEQLRVILPERSDLSNSTHYLMNPKLQKQLRQALSTGGG
PPRDVVSESVAARVPNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGL
LTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLVG
EAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQSSEG
FVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAEQII
SFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHA
RDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQSSGAPAQRK
NT seq 1389 nt NT seq  +upstreamnt  +downstreamnt
atgcctcgagtgcgggtagtttcgagaaacttcatggagatggtggctgcattaccagca
gcgaagctggatttgctctatgatcgtcattggacttgccaagcagtttttcgttcatta
cctcctttggcgaagcagtacgtgctgcgtctattatgggttgaaaatgccgttcccctg
aaatcttggcaagaatgggctcgaccggaggccctttccaagcatcaaatagcaatagac
cggttagagcaattacgagtcatcttgcctgaaaggtcagatttatcaaactctacgcat
tatttgatgaatccaaaactacagaaacaactccggcaagcattaagcacagggggcggg
cctccaagggacgtcgtgtctgaaagtgttgctgctagagttccgaattctgcggatctc
gaaaactatgccatgaaacagtgggagtcggtgcttttgcaacttgtagattgtgcggca
gatggtcctgcgggtcctaaaaatccttttatcattaaagtcttccagcgatcagggctt
ttaaccccagagaacgagtcgccttcactcaccgacctgggcttccaattcctgctgatg
gacaccaattcgcaactgtggcagcttgtgcgggagtatgttacgtcatctgaggaccga
gggacagatagcggcgagcttgtaggcttcttattagagcttggttttcatcttgtggga
gaagcgtattctgtcaactctttgtctcctgctcttcagaaggttttggatgagcttgct
gccttggggcttgtgaagttacaacagggtatgaaggagagctggtatattcctaccaag
cttgcgtcgaacctttctgcaagtctttcggaatcaactgattggcagtcttccgagggt
tttgttgtggtggagacaaattttaaagtttatgcatacacatcctcgaagctgcaaact
gaaattttacgctgttttacacggctagagtaccagttgccgaatctggttgtagccact
ctcaccaaggagagtgtcaataaagctcttggaagtggaatatcagcggaacagataatc
tcatttcttcgcaagcatgcacatcctcatgttgctcagaagattcctgttgtcccagaa
actgtttcagatcaactgcgtttgtgggaaacggatcgaaatagagttcaatttgagcct
gcttatttttacgatgacttccccacaatggctatttacgaggctgttgtagctcatgcg
cgagatcttggtggactcctctttgaagatgcttctgccaagaggctaattgtgcgatca
gacctgcacgaagatatgcggcaatacatacggaagcaaagcagcggagcacctgcacag
cggaaatga

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