KEGG T01041: PHYPADRAFT

Physcomitrella patens subsp. patens: PHYPADRAFT_111057

Entry

PHYPADRAFT_111057 CDS T01041

Definition

hypothetical protein

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

ppp Physcomitrella patens subsp. patens

Pathway

ppp03022	Basal transcription factors
ppp03420	Nucleotide excision repair

Module

ppp_M00290

Holo-TFIIH complex

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:ppp03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:ppp03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3 SinI

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 462 aa
MPRVRVVSRNFMEMVAALPAAKLDLLYDRHWTCQAVFRSLPPLAKQYVLRLLWVENAVPL
KSWQEWARPEALSKHQIAIDRLEQLRVILPERSDLSNSTHYLMNPKLQKQLRQALSTGGG
PPRDVVSESVAARVPNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKVFQRSGL
LTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLVG
EAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQSSEG
FVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAEQII
SFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHA
RDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQSSGAPAQRK

NT seq 1389 nt +upstreamnt +downstreamnt
atgcctcgagtgcgggtagtttcgagaaacttcatggagatggtggctgcattaccagca
gcgaagctggatttgctctatgatcgtcattggacttgccaagcagtttttcgttcatta
cctcctttggcgaagcagtacgtgctgcgtctattatgggttgaaaatgccgttcccctg
aaatcttggcaagaatgggctcgaccggaggccctttccaagcatcaaatagcaatagac
cggttagagcaattacgagtcatcttgcctgaaaggtcagatttatcaaactctacgcat
tatttgatgaatccaaaactacagaaacaactccggcaagcattaagcacagggggcggg
cctccaagggacgtcgtgtctgaaagtgttgctgctagagttccgaattctgcggatctc
gaaaactatgccatgaaacagtgggagtcggtgcttttgcaacttgtagattgtgcggca
gatggtcctgcgggtcctaaaaatccttttatcattaaagtcttccagcgatcagggctt
ttaaccccagagaacgagtcgccttcactcaccgacctgggcttccaattcctgctgatg
gacaccaattcgcaactgtggcagcttgtgcgggagtatgttacgtcatctgaggaccga
gggacagatagcggcgagcttgtaggcttcttattagagcttggttttcatcttgtggga
gaagcgtattctgtcaactctttgtctcctgctcttcagaaggttttggatgagcttgct
gccttggggcttgtgaagttacaacagggtatgaaggagagctggtatattcctaccaag
cttgcgtcgaacctttctgcaagtctttcggaatcaactgattggcagtcttccgagggt
tttgttgtggtggagacaaattttaaagtttatgcatacacatcctcgaagctgcaaact
gaaattttacgctgttttacacggctagagtaccagttgccgaatctggttgtagccact
ctcaccaaggagagtgtcaataaagctcttggaagtggaatatcagcggaacagataatc
tcatttcttcgcaagcatgcacatcctcatgttgctcagaagattcctgttgtcccagaa
actgtttcagatcaactgcgtttgtgggaaacggatcgaaatagagttcaatttgagcct
gcttatttttacgatgacttccccacaatggctatttacgaggctgttgtagctcatgcg
cgagatcttggtggactcctctttgaagatgcttctgccaagaggctaattgtgcgatca
gacctgcacgaagatatgcggcaatacatacggaagcaaagcagcggagcacctgcacag
cggaaatga

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-PPP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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