KEGG T01041: PHYPADRAFT

Physcomitrella patens subsp. patens: PHYPADRAFT_91575

Entry

PHYPADRAFT_91575 CDS T01041

Gene name

CHR1543

Definition

SNF2 family DNA-dependent ATPase

Orthology

K10877

DNA repair and recombination protein RAD54B [EC:3.6.4.-]

Organism

ppp Physcomitrella patens subsp. patens

Pathway

ppp03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:ppp03440]

SSDB

Motif

Pfam:

SNF2_N Helicase_C DEAD HDA2-3 AAA_22

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

AA seq 1122 aa
MRRSAAPSMLAKKLQEQGKENVINAKSAIFEKAGGSEPFRNIIPSRKRFRTPFTSPQAVV
SPRTKLHSAGGTESYGSEGLAICKGSNVVRDAPTAGRKPSQVLQLMQSRRIGTMSNISST
VSDQCDKLSPQSASPLDLYSASDIVEKVAFEEGNSDLFSKADLETIPGNSSSFESSCAVG
AKRDCPEDGELENASLDVRKKHCPAEKEGEPLLSEKGLCVEQAAAISKETVACAYDRLNE
DLKLDLIPSGGADTVNLKENLESTSNKGEGEPYVHVKEDHNDEVVSLSSKPTNPEETLHG
PHRQFSSLHGVNLLEAVNHTHELPTTVHYLVMYCPRKKNAKRKGPWSDGIIVCQGRSCTL
QDMDSKVVSKSNFQGLKDMPEGATLEVGKFEVEVMRKASNEEVLSGTLYMANKLLPSIPI
QCPLKTLKKQPFKSSKLDGSQQSSMTILYLVHVKDAWKLNEDSSTEVPVVVDPYIASKLR
PHQKDGVMFMYECIMGLRSNSFCGCLLADEMGLGKTLQVITLIWTILKQHTLFVLLDLSN
EDVSSVICKRMKLYMTVGVDFHSQGPGGSPAVKRVLVVCPSSLVHNWGNEVHKWLGRERL
RFMAVHAGTAYREAAQKFADFKAGFSSPLLITSYEILRKHIDIIASTKPGLLVCDEAHRL
KNCAGNKTIDALVGLQCPRKILLTGTPVQNDLNEFYAMIDFANPGLLGPLSSFKRIFAEP
IERSQDRTASEEEQKLGQARSLELQSRTEFCILRRTANINEAYLPTKTEVVARKILFKHE
GITGWHHCPMSPKEGSMALRSVYMTENVSATILSSITSLRKLCSHPQLSYNDIIEGTNLD
AELKSQIIAAGLSRFSDSTDNIEVLQSRASLSDEGWKFSGKLACLYWLLRTVYTSRTARQ
KDRVVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSGVGDVFVFLLS
SKAGGTGLNLIGANRLVLFDPDWNPATDSQAIARIWREGQLKPVLIYRLLSTGSIEEKIY
QRQIMKGGMSAAVEGDADVHTKKSNIGRHFSKEELKELFTLNLATNCDTFDLISRTKTAP
AKTWMDDSENVDDPALQSAIKSGIVSFVYNDRRPAPQQLATV

NT seq 3369 nt +upstreamnt +downstreamnt
atgaggagatcggctgctccaagcatgcttgcaaagaaacttcaggaacaggggaaagag
aatgttattaatgcaaaatctgctatcttcgagaaagctggcggaagtgaaccctttcgg
aacatcataccaagcaggaaaaggttcagaacacctttcacctcaccgcaggcagttgtt
tcccctagaacgaagttgcactctgcaggtggaacagaaagctacggatctgaaggactt
gcaatatgtaagggctctaacgtggttagagatgctcccactgcagggaggaaaccctcc
caggtactccaactgatgcaatctagaagaattgggacgatgagtaacatctcctccact
gtctctgaccagtgtgataaactttcgcctcaatccgcaagtccattggatctctattcc
gcatccgatattgtggagaaagttgcattcgaggaaggaaactccgacttgttttcaaag
gcagatctcgaaacaattcctgggaattcttcgtcgtttgaatcctcttgtgcagttggt
gcgaaacgggattgtcccgaggatggcgagttggaaaacgcaagtttggatgttcggaag
aaacattgtcctgctgagaaagagggagaacctctgttgtcagaaaaaggtttgtgcgtc
gaacaagcagcagcgatctcaaaggaaacagttgcttgtgcgtatgaccgtttaaatgaa
gatctcaagctagatctgataccatcgggcggtgcagatacagttaacttgaaagaaaat
ttggagtccacaagcaataaaggagaaggggagccatatgtccatgtgaaggaagatcac
aatgatgaagtagtgtctctcagttcaaagcctacgaatcctgaagagactttgcacggt
ccccatcgccagttctcatctcttcatggtgtaaatttgctagaggcagtgaatcatacg
cacgagctgccgacaacagtgcattacttggttatgtattgcccgcgcaaaaaaaatgct
aagcgaaaaggtccctggtctgatggtattattgtttgtcaagggcgatcgtgcactctc
caagacatggatagtaaagttgttagtaaatcgaattttcaaggattgaaggatatgcca
gaaggagccactcttgaggtcggaaaatttgaggtagaggtgatgagaaaagcttctaat
gaagaagttctcagtggtactttgtatatggctaacaagcttcttccgtcaattccaatt
cagtgtccattgaagacgttgaagaaacagccgttcaaaagttcaaagctggatggatca
caacagtccagcatgacaattttgtatctggttcatgtgaaggacgcttggaagctgaac
gaggattcatctacagaggttcctgtcgtcgtggatccgtatattgcatcaaagttgagg
ccgcatcaaaaagatggagtgatgttcatgtatgaatgtatcatgggactaagatcgaac
tccttctgcggatgtttgctagctgatgaaatgggtcttggcaagactctgcaagtaatc
accttaatatggacaattttgaagcagcatacacttttcgtcttacttgacctttcaaac
gaagatgtaagttcagtcatttgcaaaaggatgaagttgtacatgactgttggagttgac
tttcattcgcagggtcctggcggttctccagctgtcaagcgtgtcctggtcgtttgcccc
tcgtctcttgttcataactgggggaacgaggttcacaaatggcttgggagggagagattg
aggtttatggcggtacatgcaggaactgcgtacagggaggctgctcagaaatttgcagat
tttaaagctggattctccagtccgctcttgataacatcctacgaaattctacggaaacac
atcgacataattgcatccaccaaaccggggctactggtttgtgatgaggctcatcgcctc
aagaactgtgctggtaacaagaccattgatgctctcgttgggcttcaatgccctcgtaaa
attcttctgaccggaactcctgtccagaacgatctaaacgagttttatgctatgattgac
tttgccaatccagggcttttaggccctctttcttcgtttaagcggatattcgcagagcct
attgagcgaagtcaggatcgcactgcaagtgaagaggagcaaaagttgggacaagccaga
tcccttgaacttcaatcgagaactgaattctgcattcttcggaggacagcaaacataaac
gaagcatacttacctaccaaaacagaggtagtagccagaaagattcttttcaaacatgaa
ggaatcactggctggcatcattgtcctatgtcgcctaaagaaggatcaatggcacttagg
tcggtgtacatgaccgaaaatgtttcagctacgatcttatcctcaataacctctttgagg
aagttgtgtagccaccctcaacttagttacaacgatatcattgaaggcacaaacctggat
gcggagctaaaatctcagataattgctgctggattaagcagatttagtgacagtacagat
aacattgaagtcctccaatcaagggcgagcctgtcagatgaaggatggaagttttctggg
aaattggcatgtttatattggctcctccggacagtttacacaagccgtacagctaggcaa
aaggatagggtggtggtggtttccaattttactcgaacattggacttaattcaggatatg
tgcacgagtcagggttggaattggttacgactggacggttcgacggaagcatctaaacgg
caactactcgttgatcaattaaacagtggcgttggagatgtgtttgtgttccttctgtca
tcaaaggctggtggaactggtcttaacctgatcggggccaataggcttgtactgtttgat
cctgactggaatccagctaccgactcccaggcgattgctcgtatatggagagaagggcag
ctaaaaccagtcctgatatacaggcttctgtcgactggcagcatcgaagaaaaaatctat
cagcgtcagataatgaaaggaggaatgtctgcagctgtggaaggagatgcggatgtccat
accaaaaagagcaacataggtcgtcatttttccaaggaagagctcaaagagcttttcaca
ttaaatctggcgacaaattgcgacactttcgacctcatctccaggacaaaaacggctcct
gccaagacctggatggatgattcagaaaacgttgacgatcctgcgcttcagagtgctatc
aagtcaggaatcgtgtcattcgtgtacaacgacagacgtccagcaccacagcaactcgca
acagtctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PPP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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