KEGG T03613: PPC

Pseudomonas protegens Cab57: PPC_4322

Entry

PPC_4322          CDS       T03613

Name

(GenBank) RNA pseudouridine synthase

K06177

tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]

Organism

ppro Pseudomonas protegens Cab57

Brite

KEGG Orthology (KO) [BR:ppro00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ppro03009]
    PPC_4322
   03016 Transfer RNA biogenesis [BR:ppro03016]
    PPC_4322
Enzymes [BR:ppro01000]
5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.28  tRNA pseudouridine32 synthase
     PPC_4322
    5.4.99.29  23S rRNA pseudouridine746 synthase
     PPC_4322
Ribosome biogenesis [BR:ppro03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    PPC_4322
Transfer RNA biogenesis [BR:ppro03016]
Prokaryotic type
  tRNA modification factors
   Psudouridine synthases
    PPC_4322

SSDB

Motif

Pfam:

PseudoU_synth_2

Other DBs

NCBI-ProteinID:

BAO63669

Position

complement(4839162..4840052)

AA seq 296 aa
MSSAPFSAAQHQASTLYLPPGSWATVLDCLCDHFKAISREQWLDRIARGRVLDGQGQPIS
LELAYREGLRIHYFREVPDEKVIPVEETILYADEHLVVADKPHFLPVTPAGEYVEQTLLR
RLIRRLGNPHLVPLHRIDRHTAGLVLFSANPDSRSAYQALFPTRKIEKRYEAIAAALPQL
NFPLLHKSRLVDGEPFFRMQEAQGPSNTETAIEVREKHGELWRYALYPVTGKKHQLRVHM
NALGAAICNDPFYPEVLKDIEDDYARPLKLLAQGLRFIDPLSGQEREFESRISLQW

NT seq 891 nt +upstreamnt +downstreamnt
atgtcatccgcacctttttccgctgcacagcatcaggccagtaccctgtacctgcccccg
ggctcctgggcgacggtgctggattgcctgtgtgatcacttcaaggccatcagccgcgag
cagtggctggaccgtatcgcccgtggccgggtgctggacgggcagggccagcccatcagt
ctggagctggcctatcgcgaaggcttgaggattcactactttcgcgaggtgccggatgaa
aaggtgattccggtcgaggaaaccatcctctacgccgatgagcatctggtggtggcggac
aagccgcactttttgccggtgaccccggcaggagagtacgtcgagcagacgttgctgcgg
cgcttgatccggcgcctgggcaacccgcacctggtgcccctgcatcgtatcgaccggcat
acggctgggctggtgctgttctccgcgaacccagacagtcgctcggcctatcaggcgctg
tttcccacccgcaagatagaaaaacgctacgaggcgattgccgctgccttgccgcagttg
aactttccgctgctgcacaagagccggctggtggacggtgagcccttcttccgcatgcaa
gaagcgcaggggccaagcaataccgaaacagccatcgaggtcagggagaaacacggcgag
ctgtggcgttacgccctgtacccggtcacgggcaagaagcaccaactgcgggtgcatatg
aatgccctgggagcggcgatctgcaacgatcccttttatcccgaggtgctcaaggacatc
gaggacgactatgcccggccgctgaagctgctggcccaggggctgcgtttcatcgacccg
ttgagcgggcaggaacgcgagttcgagagccgcatcagcctgcagtggtga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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