KEGG   Pseudomonas psychrotolerans: BJP27_08525
Entry
BJP27_08525       CDS       T05074                                 
Name
(GenBank) bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC
  KO
K15461  tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
Organism
ppsl  Pseudomonas psychrotolerans
Brite
KEGG Orthology (KO) [BR:ppsl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppsl03016]
    BJP27_08525
Enzymes [BR:ppsl01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.61  tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
     BJP27_08525
Transfer RNA biogenesis [BR:ppsl03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    BJP27_08525
SSDB
Motif
Pfam: DAO Methyltransf_30 NAD_binding_8 FAD_binding_3 FAD_binding_2 GIDA Pyr_redox_2 Pyr_redox HI0933_like 3HCDH_N Thi4 AlaDh_PNT_C Lycopene_cycl FAD_oxidored MurD-like_N Pyr_redox_3 NAD_Gly3P_dh_N ApbA Shikimate_DH
Other DBs
NCBI-ProteinID: APQ11550
Position
1894240..1896180
AA seq 646 aa
MTDFQHAQLDWDPTGQPLSRTYGDVYFSRASGLEETRYVFLQQNRLPERFAALQAGEVFC
IGETGFGTGLNFLCAWQLFEALAPQGARLHFVSVERFPLTAADLAQALALWPELAAYSAA
LQRQYQAIHPGFQRLILGEGRITLTLLVGDVLERLPELDARCDAWFLDGFAPAKNPEMWT
PALFAELARLSGPGTTLATFTCAGFVRRGLNEAGFAMGKVPGFGHKREMLAGVLERPVAT
VTPPWYARPPRPTGPRTAVVIGAGLAGCATAASLARRGWQVRVLERHAAPAQEASGNPQG
VLYLKLSAHDTPLSRLILDGFGLTLRELQALPPGSAWSPCGVLQLALDAKDAARQAQLVA
HFPAGLLQPLAQDAASQRAGLGLAAGGLFFPEGGWVHPPALCAHWLAHPNIELVTGVEVV
DLQPTPAGWRLGTRAAAFEATVIVVASAAQAKSLLPELPLKAIRGQLSNLPETPRSQALN
TVVCGEGYLAPAREGRHCLGASFVFDREDTEPSQAEHASNLQLLAELSPELAASYSAADL
DGRVAFRCTSPDYLPLVGPVVDEALFAQRYQVLGQDARQIPDLPAPWRPGLYLNLAHGSR
GLVTTPLAAELLAAWLEDEPLPVARRVAEACHPNRFPLRRLIRGQG
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgaccgacttccagcacgcccagctcgactgggaccccaccgggcaacccctgtcccgt
acttatggcgatgtgtacttctcccgcgccagcggcctggaagagacccgctacgtcttt
ctgcaacagaatcgcctgcccgaacgcttcgccgcgctgcaggccggcgaggtcttctgc
atcggcgaaaccggcttcggcaccggcctcaatttcctctgcgcctggcagctgttcgag
gccctggcgccccagggtgcccgcctgcacttcgtcagcgtcgagcgttttccgctcacc
gccgccgatctcgcccaggcgctggcgctgtggccagagctggcggcctatagcgccgcg
ctgcaacggcagtaccaggccatccatcccggcttccagcgcctgatcctgggtgagggc
cggatcaccctcaccctgctggtgggcgatgtgctggagcgcctgccggagctggacgcc
cgctgcgatgcctggttcctcgatggcttcgccccggccaagaatcccgagatgtggacg
cccgcgctgttcgccgaactggcgcggctatccggccccggcaccaccctcgccaccttc
acctgcgccggcttcgtgcggcgtgggctcaacgaagccggcttcgccatgggcaaggtg
cccggcttcggccataagcgggagatgctggccggcgtgctggagcgcccggtcgccacg
gtgacgcccccctggtatgcccgcccgccccgccccacgggcccacgcaccgccgtggtg
ataggcgcggggctggccggctgtgccaccgccgccagtctcgcccggcgcggctggcag
gtacgggtgctcgaacggcatgccgccccggcgcaggaagcctccggcaatccccaaggc
gtgctctatctcaagctgtcggcccacgacaccccgctcagccggctgatcctggacggc
ttcggcctgacgctgcgcgaattgcaggccctgccgccgggctcggcctggtcgccctgc
ggggtcttgcaactggcactggacgccaaggacgccgcgcgccaggcacagctggtcgcg
cactttcctgccggcctgctgcagccactggcgcaggacgccgccagccagcgtgccggt
cttggtcttgcggcgggcggcctgttctttccggaagggggctgggtccatccgcccgcg
ctgtgcgcgcactggctggcccacccgaacatcgagctggtcaccggcgtggaggtcgtc
gacctgcagccaaccccggcaggctggcgtctcggcacccgcgctgcggccttcgaggcg
acggtgatcgtggtggccagcgccgcccaggccaagagcttgctccccgaactgccgctc
aaggccattcgcgggcaactgtccaatctgccggaaaccccgcgcagtcaggcgttgaac
accgtggtctgcggcgaaggctacctggccccggcgcgcgaaggtcggcactgcctgggt
gccagcttcgtcttcgaccgtgaagataccgagcccagccaagcggagcacgccagcaac
ctgcaactgctcgccgagctttcgcccgaattggccgccagctatagcgccgcagacctc
gacggtagagtggcctttcgctgtacctcgccggactacctgccactggttggcccggtg
gtggacgaagccttgttcgcccagcgttatcaggtactcggccaggacgcgcgtcagata
cccgatctgccggcgccctggcgtcccggtctctacctgaacctggcccatggttcacgc
ggcctggtcaccacgccactggccgccgaactgctggcggcctggctggaggacgaaccc
ctgccggtggcgcggcgggtcgccgaggcctgtcaccccaatcgtttccccctgcgccgg
ctgatccgcggccagggttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (38)   

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