KEGG   Pseudomonas putida KT2440: PP_0004
Entry
PP_0004           CDS       T00114                                 
Symbol
trmF
Name
(GenBank) tRNA uridine 5-carboxymethylaminomethyl modification enzyme
  KO
K03495  tRNA uridine 5-carboxymethylaminomethyl modification enzyme
Organism
ppu  Pseudomonas putida KT2440
Brite
KEGG Orthology (KO) [BR:ppu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ppu03016]
    PP_0004 (trmF)
   03036 Chromosome and associated proteins [BR:ppu03036]
    PP_0004 (trmF)
Transfer RNA biogenesis [BR:ppu03016]
 Eukaryotic type
  tRNA modification factors
   Other tRNA modification factors
    PP_0004 (trmF)
 Prokaryotic type
    PP_0004 (trmF)
Chromosome and associated proteins [BR:ppu03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    PP_0004 (trmF)
SSDB
Motif
Pfam: GIDA GIDA_C_1st GIDA_C FAD_oxidored FAD_binding_2 Pyr_redox_2 Thi4 AlaDh_PNT_C DAO HI0933_like Pyr_redox FAD_binding_3 Pyr_redox_3
Other DBs
NCBI-ProteinID: AAN65638
UniProt: Q88RW8
Position
complement(2486..4381)
AA seq 631 aa
MVDFPSRFDVIVIGGGHAGTEAALASARMGVKTLLLTHNVETLGHMSCNPAIGGIGKSHL
VKEIDALGGAMALATDKSGIQFRVLNNRKGPAVRATRAQADRAIYKAVVREILENQPNLW
IFQQSCDDLIVEQDQVKGVVTQMGLRFFAESVVLTTGTFLGGLIHIGLQNHSGGRAGDPP
SIALAHRMRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGDTPIPVMSFMGNAEMHPRQ
VSCWITHTNARTHEIIASNLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKESHQVFIEP
EGLNTHELYPNGISTSLPFDVQLELVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLET
KVIGGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLIT
LGTQEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLIDDQRWAAFCAKRDGIEREEQR
LKSTWVRPNTEQGQAIVDKFGTPLSHEYSLLNLLARPEIDYAGLIEATGGEAIDPQVAEQ
VEIRTKYAGYIDRQQDEIARLRASEDTRLPVDIDYTTISGLSKEIQGKLSQTRPQTLGQA
SRIPGVTPAAISLLLIHLKKRGAGRELEQSA
NT seq 1896 nt   +upstreamnt  +downstreamnt
gtggtggatttcccttcccgttttgacgtgatcgtcatcggcggcggccatgccggtacc
gaggctgcgcttgcgtctgcacgcatgggtgtgaaaaccctgctgctgacccataacgtg
gaaaccctcggtcacatgagctgcaaccccgccatcggcggtattggcaaaagccatctg
gtcaaagagatcgatgcgctcggcggcgccatggcgctggccaccgacaagagcggcatc
cagttccgcgttctgaacaaccgcaagggcccggccgtacgtgccacccgtgcgcaagcc
gaccgcgccatctacaaggcagtggtacgtgaaatcctggaaaaccagccaaacctgtgg
atattccagcagtcctgcgacgacctgatcgtcgagcaggaccaggtcaaaggcgtggtg
acccagatgggcctgcgtttctttgccgaatctgtggtgctgactaccggtaccttcctc
ggcggccttatccacattggtctgcaaaaccattccggtggtcgcgccggtgatccacct
tcgattgccctggcccaccgcatgcgtgaactgccgttgcgcgtcggccgcctgaaaacc
ggtaccccgccacgcattgacggccgctcggtggacttctcggtaatgaccgaacagcca
ggcgatacgccgatcccggtgatgtcgttcatgggcaatgccgaaatgcacccgcgacag
gtgagctgctggattacccacaccaatgcgcgcacccacgagatcattgcgtcgaacctc
gaccgttcaccgatgtactcgggcgtgatcgaaggtgtcggtccgcgctactgtccgtct
atcgaagacaagatccaccgctttgccgacaaggaaagccaccaggtgttcatcgagccg
gaaggcttgaacacccatgagttgtatcccaacggtatttccacttcgctgccgttcgac
gtgcagttggagctcgtgcgttccatccgtggcatggaaaacgcccacatcgtgcgcccc
ggctacgccatcgaatacgactacttcgatccccgcgacctcaagtacagcctcgagacg
aaagtcatcggcggcctgttcttcgccgggcagatcaacggcaccaccgggtacgaagaa
gccggcgcccagggcctgctggccgggactaacgccgcacttcgggcgcagggccgtgac
agctggtgcccgcgccgcgacgaggcatacatcggcgtactggtggacgacctgattacc
ttgggtactcaggagccgtaccgcatgtttacctcgcgtgccgagtaccggctgatactg
cgcgaagacaacgccgacctgcgcctgaccgaaaagggccgtgaactgggcctgatcgat
gaccagcgctgggccgcattctgcgccaagcgcgacggtatcgagcgtgaggaacagcgc
ctgaaatcgacctgggttcggcccaataccgagcaaggccaggccattgtggataaattc
ggcactccgctgagccacgagtacagcctgctcaacctgctggcgcgccccgaaatcgac
tacgccggcctgatcgaagcgactggcggtgaagcgatcgatccacaggttgccgagcag
gtcgagatccgcaccaagtacgccggctacatcgaccgccagcaggatgaaattgcccga
ctgcgcgccagcgaagacacacgcctgcctgtggatatcgactacacgacgatttccggc
ctgtccaaggagatacagggcaagctgagccagacccgtccgcagacgctgggtcaggct
tcgcgtatcccgggtgtgaccccggcggcgatttccctgttgctgattcacttgaaaaaa
cgcggcgctggccgcgaattggagcaaagcgcttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (13)   
   Pfam (13)   
All databases (31)   

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