KEGG P.putida: PP

Pseudomonas putida KT2440: PP_5064

Entry

PP_5064 CDS P.putida

Gene name betA

Definition choline dehydrogenase (EC:1.1.99.1)

Orthology K00108 choline dehydrogenase [EC:1.1.99.1]

Pathway ppu00260 Glycine, serine and threonine metabolism

Class Metabolism; Amino Acid Metabolism; Glycine, serine and threonine
metabolism [PATH:ppu00260]

SSDB

Motif Pfam: GMC_oxred_N GMC_oxred_C FAD_binding_2 DAO Lycopene_cycl
Pyr_redox_2 Thi4 TrkA_N FAD_binding_3 ApbA
PROSITE: GMC_OXRED_1 GMC_OXRED_2

Other DBs NCBI-GI: 26991740
NCBI-GeneID: 1043008
JCVI-CMR: PP_5064
UniProt: Q88CW6

Position 5775675..5777372

AA seq 565 aa
MSQEFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR
RYNWAYETDPEPYMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTY
LDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNG
YQQEGFGPMDRTVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFDGKRAIGVTYL
VGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQD
HLELYLQYACTQPVSLYPSLLWWNQPAIGAEWMFNGTGIGASNQFEAGGFIRTRPEFKWP
NIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQVKSKDPRQHPSILFNYMSTE
QDWQEFRDGIRLTREIMAQPALDPYRGREISPGADVQTDEQLDKFIREHAETAFHPSCSC
KMGTDDMAVVDGEGRVHGMKGLRVVDASIMPLIITGNLNATTIMIAEKISDKIRGRKPLP
RSTAKYYVAGDAPVKGKPMREVKQG

NT seq 1698 nt +upstreamnt +downstreamnt
atgtcccaagaattcgattacatcatcgtcggtgccggctcggccggtaacaccctggcg
acccgcctgaccgaagacgccggcgtcaccgtattgctgctggaagccggtggccccgac
taccgcttcgacttccgcacccagatgccagccgccctggccttcccgctgcaaggccgc
cgctacaactgggcctacgagaccgacccggagccgtacatggacggccgccgcatggaa
tgtggccgtggcaagggcctgggtggctcgtcgctgatcaacggcatgtgctacatccgc
ggcaacgccatggacttcgacggctgggcagaactgccaggcctggaagactggacctac
ctggactgcctgccgtacttccgcaaggccgaaacccgtgacatcggcccgaacgactac
catggcggcgaaggcccggtcagcgtgaccacgccgaaagccggcaacaacccgctgttc
catgccatggtcgaagctggcgtacaggccggttacccacgcacagaagacctcaacggt
taccagcaggaaggcttcggtccgatggaccgcaccgtgaccaagaacggccgccgctcc
agcactgcccgtggttacctggaccaggccaagaagcgcccgaacctgaccatcgtcacc
cacgccctcacggatcgcgttctgttcgacggcaagcgcgccatcggcgtgacctacctg
gtcggcgacagcgaagagcgcgtcgaagcccgcgcccgcaaggaagtgatcgtcagctcc
ggggccatcgcctcgccgcaactgctgcagcgctccggcgtcggcccgcgcgccctgctg
gaaagcctcgacatcccggttgtgcacgaccttccgggcgttggtgaaaaccttcaggac
cacctggaactgtacctgcagtacgcctgcacccagccggtttcgctatacccgtcgctg
ctgtggtggaaccagccggcgatcggtgccgagtggatgttcaatggcaccggtatcggc
gccagcaaccagttcgaggccggggggttcatccggactcgtccggagttcaagtggccg
aacatccagtaccacttcctgccggttgcgattaactacaacggctccaatggcgtgaag
gaacatggcttccaggcgcacatgggctccatgcgctcgcctgcccgtggccgcatccag
gtcaagtcgaaagacccgcgccagcacccgagcatcctgttcaactacatgtccaccgag
caggactggcaggaattccgtgacggcattcgtctgacccgtgaaatcatggcccagccg
gcgctggacccgtaccgtggccgcgaaatcagcccgggcgctgacgtgcaaaccgacgag
cagctggacaagttcatccgcgagcacgccgaaaccgccttccacccgtcctgctcgtgc
aagatgggcaccgacgacatggcagtggtcgatggtgaaggccgcgtgcacggcatgaag
ggcctgcgcgtggtcgatgcctcgatcatgccgctgatcatcaccggcaacctcaacgcc
accacgatcatgatcgccgagaagatttcggacaagatccgtggtcgcaagccactgccg
cgcagcaccgccaagtactacgtggcgggggatgcaccagtgaaaggcaagccgatgcgt
gaagtgaaacagggctga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JCVI-CMR (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (10)   
   PROSITE (2)   
All databases (24)

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