KEGG   Pseudomonas putida DLL-E4: DW66_0456
Entry
DW66_0456         CDS       T03439                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ppud  Pseudomonas putida DLL-E4
Pathway
ppud03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ppud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    DW66_0456
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ppud03021]
    DW66_0456
   03400 DNA repair and recombination proteins [BR:ppud03400]
    DW66_0456
Enzymes [BR:ppud01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     DW66_0456
Transcription machinery [BR:ppud03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     DW66_0456
DNA repair and recombination proteins [BR:ppud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      DW66_0456
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AHZ74982
UniProt: A0A059UR85
Position
513139..517212
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGASKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNTFYTTNVFHISGEK
LSLELVPQRLRGEVAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTEMTTELLIKVAKAQVVRIETLYTNDIDCGPFISDTLKIDT
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVSDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
KVQRGDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITDEVLDGLEHGQWFKLRMA
EDALNEQLEKAQQYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKIDRMIEEQRKAAELRVFLTEVYNEIGGRQENLDEFTDEEILALAHNLKKGVPMATP
VFDGAKEREIKAMLKLADLPESGQMVLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgcgaattcctgcaa
gcgggagcatccaaggatcagttccgcgacgtcggcctgcacgcggccttcaaatcggta
ttcccgatcatcagctactccggcaatgctgccctggagtacgtaggctatcgcctgggc
gaacccgccttcgatgtgaaggaatgtgtcctgcgtggcgtgaccttcgcggtcccactg
cgggtcaaggtgcgcctgatcatcttcgacaaggaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgagaacggtaccttc
gttatcaacggtaccgagcgtgtgatcgtttcccagctgcaccgttcgcctggtgtgttc
ttcgaccacgaccgtggcaagactcacagctccggcaagctgctgtactccgctcgcatc
atcccgtaccgcggctcctggctggacttcgagttcgatccgaaggactgcgtgttcgta
cgtatcgaccgtcgccgcaaactgccggcctcggtgctgctgcgtgccctgggttacagc
actgaagaagtgctgaataccttctacaccaccaacgtgttccatatttccggcgagaaa
ctcagcctggaactggtaccgcagcgtctgcgtggtgaggttgcagtcatggatatccat
gacgaaaccggcaaagtcatcgtcgagcagggccgccgtattaccgcgcgccacatcaac
cagctcgagaaggccggcgtcaagcagctggacgttcctatggaatacgtcctgggccgc
actaccgccaaggccatcgtgcatccggctaccggcgagatcctggccgaatgcaacacc
gagatgaccaccgaactgctgatcaaggtcgccaaggcacaggtcgtccgtatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctccgataccctgaagatcgacacc
accagcaaccagctggaagccctggtcgagatctaccgcatgatgcgtcctggcgaaccg
ccgaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtccgccgttggccgcatgaagttcaaccgtcgtatcggtcgtaccgagatcgaa
ggttcgggcgtgctgagcaaggaagatatcgtcgaggttctgaagaccctggtcgacatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctgggtaaccgtcgtgtacgttgc
gtcggtgagatggccgagaaccagttccgcgttggcctggtgcgtgtcgagcgcgccgtc
aaggaacgcctgtcgatggcggaaagcgaaggcttgatgccgcaagacctgatcaacgcc
aagccggttgcggcagcggtgaaagagttcttcggttccagccagctgtcccagttcatg
gaccagaacaacccgctctccgagattacccacaagcgccgcgtctccgcactcggccca
ggcggtctgacccgtgagcgtgccggcttcgaagtccgtgacgtacacccgacccactac
ggccgtgtgtgcccgatcgagaccccagaaggtccgaacatcggtctgatcaactccctg
gcagcctatgcccgcaccaaccagtacggcttcctggaaagcccgtaccgcgtggtgaag
gaaggcgtggtcagcgacgacatcgtgttcctgtcggccattgaagaagcggatcacgtc
atcgcccaggcttcggccgcgatgaacgagaagaagcaactgatcgatgagctggtagct
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaagcaggttgtttccgtcgctgcgtcgttgattccgttcctcgagcacgacgac
gccaaccgtgcattgatgggttccaacatgcagcgtcaggctgtaccgaccctgcgcgcc
gacaagccgctggtaggtaccggcatggagcgcaacgttgcccgtgactccggtgtctgc
gtcgttgctcgccgcggtggtgtgatcgactccgtcgacgccagccgtatcgttgttcgc
gttgccgacgacgaagtggaaaccggcgaagcaggtgtggatatctacaacctgaccaag
tacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgac
aaggtccagcgtggcgacatcatggccgacggcccgtccaccgacatgggtgaactggca
ctgggtcagaacatgcgcatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctttccgagcgtgtggttcaggaagaccgcttcaccaccatccacatccaggaa
ctgacctgtgtggcgcgtgacaccaagcttggcccagaggaaatcactgcggacatcccg
aacgtgggtgaagccgcactgaacaagctggacgaagccggtatcgtctacgtgggtgcc
gaagtcggtgctggcgacatcctggtcggcaaagtaacgccaaaaggcgaaacccagctg
actccggaagagaaactgctgcgcgcaatcttcggtgagaaggccagcgacgttaaggac
acctccctgcgcgtgccaaccggcaccaagggtaccgtcatcgacgtacaggtcttcacc
cgtgatggcgtcgagcgcgacagccgcgccctggccatcgagaagatgcagctggacgag
attcgcaaggacctcaacgaagagttccgcatcgtcgaaggtgcaaccttcgagcgtctg
cgttctgctctgaacggccaggtggtcgacggtggcgcgggcctgaagaaaggcaccgtg
atcactgacgaagtgctggatggtctggagcacgggcagtggttcaaactgcgcatggcc
gaagatgcactgaacgagcagctggaaaaggctcagcagtacatcgtcgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggtgatgacctggca
ccgggcgtactgaagatcgtcaaggtttacctggcaatccgccgtcgcatccagccgggt
gacaagatggcgggtcgtcacggtaacaagggtgtcgtctcggtaatcatgccggtcgaa
gacatgccgcacgacgccaacggtactccggtcgatgtcgtactgaacccgctgggtgta
ccttcgcgtatgaacgtcggtcagatcctcgaaacccacctgggcctggcggccaagggt
ctgggcgagaagatcgaccgcatgatcgaagagcagcgcaaggccgctgaactgcgcgtg
ttcctgaccgaggtctacaacgagatcggcggtcgtcaggaaaacctggacgagttcacc
gacgaagagatcctggccctggcccacaacctgaagaagggcgtgccaatggctaccccg
gtcttcgacggtgccaaggagcgcgagatcaaggccatgctgaagctggccgacctgcca
gagagcggccagatggtgctgttcgatggccgtaccggcaacaagttcgagcgtcctgtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggccgtaccaagatgtac
aagaacatcgtggatggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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